Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS19420

Experiment: 2-Deoxy-D-Ribose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS19415 and QEN71_RS19420 are separated by 61 nucleotidesQEN71_RS19420 and QEN71_RS19425 are separated by 432 nucleotides QEN71_RS19415: QEN71_RS19415 - aldehyde dehydrogenase, at 4,322,523 to 4,323,974 _RS19415 QEN71_RS19420: QEN71_RS19420 - p-hydroxycinnamoyl CoA hydratase/lyase, at 4,324,036 to 4,324,872 _RS19420 QEN71_RS19425: QEN71_RS19425 - 3-(3-hydroxy-phenyl)propionate transporter MhpT, at 4,325,305 to 4,326,549 _RS19425 Position (kb) 4324 4325Strain fitness (log2 ratio) -2 -1 0 1at 4323.960 kb on - strandat 4324.052 kb on + strandat 4324.052 kb on + strandat 4324.053 kb on - strandat 4324.053 kb on - strandat 4324.053 kb on - strandat 4324.163 kb on + strand, within QEN71_RS19420at 4324.163 kb on + strand, within QEN71_RS19420at 4324.164 kb on - strand, within QEN71_RS19420at 4324.164 kb on - strand, within QEN71_RS19420at 4324.164 kb on - strand, within QEN71_RS19420at 4324.164 kb on - strand, within QEN71_RS19420at 4324.164 kb on - strand, within QEN71_RS19420at 4324.365 kb on - strand, within QEN71_RS19420at 4324.367 kb on + strand, within QEN71_RS19420at 4324.368 kb on - strand, within QEN71_RS19420at 4324.650 kb on - strand, within QEN71_RS19420at 4324.705 kb on + strand, within QEN71_RS19420at 4324.863 kb on - strandat 4324.878 kb on + strandat 4324.878 kb on + strandat 4324.986 kb on + strandat 4324.987 kb on - strandat 4324.987 kb on - strandat 4325.142 kb on + strandat 4325.343 kb on + strandat 4325.343 kb on + strandat 4325.343 kb on + strandat 4325.767 kb on + strand, within QEN71_RS19425at 4325.767 kb on + strand, within QEN71_RS19425

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
remove
4,323,960 - +0.1
4,324,052 + +1.5
4,324,052 + -0.1
4,324,053 - +0.3
4,324,053 - -0.2
4,324,053 - +0.0
4,324,163 + QEN71_RS19420 0.15 +0.6
4,324,163 + QEN71_RS19420 0.15 -0.5
4,324,164 - QEN71_RS19420 0.15 -1.9
4,324,164 - QEN71_RS19420 0.15 -2.5
4,324,164 - QEN71_RS19420 0.15 -2.1
4,324,164 - QEN71_RS19420 0.15 -1.7
4,324,164 - QEN71_RS19420 0.15 -2.1
4,324,365 - QEN71_RS19420 0.39 -1.2
4,324,367 + QEN71_RS19420 0.40 -0.1
4,324,368 - QEN71_RS19420 0.40 -1.3
4,324,650 - QEN71_RS19420 0.73 -1.1
4,324,705 + QEN71_RS19420 0.80 -0.9
4,324,863 - -1.2
4,324,878 + -0.6
4,324,878 + -1.0
4,324,986 + +0.5
4,324,987 - -0.4
4,324,987 - -0.5
4,325,142 + +0.4
4,325,343 + -0.4
4,325,343 + +0.8
4,325,343 + -0.4
4,325,767 + QEN71_RS19425 0.37 +0.9
4,325,767 + QEN71_RS19425 0.37 -0.5

Or see this region's nucleotide sequence