Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS19415 and QEN71_RS19420 are separated by 61 nucleotides QEN71_RS19420 and QEN71_RS19425 are separated by 432 nucleotides
QEN71_RS19415: QEN71_RS19415 - aldehyde dehydrogenase, at 4,322,523 to 4,323,974
_RS19415
QEN71_RS19420: QEN71_RS19420 - p-hydroxycinnamoyl CoA hydratase/lyase, at 4,324,036 to 4,324,872
_RS19420
QEN71_RS19425: QEN71_RS19425 - 3-(3-hydroxy-phenyl)propionate transporter MhpT, at 4,325,305 to 4,326,549
_RS19425
Position (kb)
4324
4325 Strain fitness (log2 ratio)
-2
-1
0
1 at 4323.960 kb on - strand at 4324.052 kb on + strand at 4324.052 kb on + strand at 4324.053 kb on - strand at 4324.053 kb on - strand at 4324.053 kb on - strand at 4324.163 kb on + strand, within QEN71_RS19420 at 4324.163 kb on + strand, within QEN71_RS19420 at 4324.164 kb on - strand, within QEN71_RS19420 at 4324.164 kb on - strand, within QEN71_RS19420 at 4324.164 kb on - strand, within QEN71_RS19420 at 4324.164 kb on - strand, within QEN71_RS19420 at 4324.164 kb on - strand, within QEN71_RS19420 at 4324.365 kb on - strand, within QEN71_RS19420 at 4324.367 kb on + strand, within QEN71_RS19420 at 4324.368 kb on - strand, within QEN71_RS19420 at 4324.650 kb on - strand, within QEN71_RS19420 at 4324.705 kb on + strand, within QEN71_RS19420 at 4324.863 kb on - strand at 4324.878 kb on + strand at 4324.878 kb on + strand at 4324.986 kb on + strand at 4324.987 kb on - strand at 4324.987 kb on - strand at 4325.142 kb on + strand at 4325.343 kb on + strand at 4325.343 kb on + strand at 4325.343 kb on + strand at 4325.767 kb on + strand, within QEN71_RS19425 at 4325.767 kb on + strand, within QEN71_RS19425
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 4,323,960 - +0.1 4,324,052 + +1.5 4,324,052 + -0.1 4,324,053 - +0.3 4,324,053 - -0.2 4,324,053 - +0.0 4,324,163 + QEN71_RS19420 0.15 +0.6 4,324,163 + QEN71_RS19420 0.15 -0.5 4,324,164 - QEN71_RS19420 0.15 -1.9 4,324,164 - QEN71_RS19420 0.15 -2.5 4,324,164 - QEN71_RS19420 0.15 -2.1 4,324,164 - QEN71_RS19420 0.15 -1.7 4,324,164 - QEN71_RS19420 0.15 -2.1 4,324,365 - QEN71_RS19420 0.39 -1.2 4,324,367 + QEN71_RS19420 0.40 -0.1 4,324,368 - QEN71_RS19420 0.40 -1.3 4,324,650 - QEN71_RS19420 0.73 -1.1 4,324,705 + QEN71_RS19420 0.80 -0.9 4,324,863 - -1.2 4,324,878 + -0.6 4,324,878 + -1.0 4,324,986 + +0.5 4,324,987 - -0.4 4,324,987 - -0.5 4,325,142 + +0.4 4,325,343 + -0.4 4,325,343 + +0.8 4,325,343 + -0.4 4,325,767 + QEN71_RS19425 0.37 +0.9 4,325,767 + QEN71_RS19425 0.37 -0.5
Or see this region's nucleotide sequence