Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS18850

Experiment: 2-Deoxy-D-Ribose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS18840 and QEN71_RS18845 are separated by 401 nucleotidesQEN71_RS18845 and QEN71_RS18850 are separated by 48 nucleotidesQEN71_RS18850 and QEN71_RS18855 are separated by 110 nucleotides QEN71_RS18840: QEN71_RS18840 - hypothetical protein, at 4,194,845 to 4,195,369 _RS18840 QEN71_RS18845: QEN71_RS18845 - hypothetical protein, at 4,195,771 to 4,196,001 _RS18845 QEN71_RS18850: QEN71_RS18850 - hemerythrin domain-containing protein, at 4,196,050 to 4,196,622 _RS18850 QEN71_RS18855: QEN71_RS18855 - FdhF/YdeP family oxidoreductase, at 4,196,733 to 4,199,012 _RS18855 Position (kb) 4196 4197Strain fitness (log2 ratio) -2 -1 0 1 2at 4195.243 kb on - strand, within QEN71_RS18840at 4195.344 kb on + strandat 4195.530 kb on - strandat 4195.595 kb on + strandat 4195.664 kb on + strandat 4195.665 kb on - strandat 4195.769 kb on + strandat 4195.878 kb on + strand, within QEN71_RS18845at 4195.879 kb on - strand, within QEN71_RS18845at 4195.947 kb on - strand, within QEN71_RS18845at 4195.947 kb on - strand, within QEN71_RS18845at 4195.971 kb on + strand, within QEN71_RS18845at 4195.971 kb on + strand, within QEN71_RS18845at 4196.230 kb on + strand, within QEN71_RS18850at 4196.612 kb on - strandat 4196.612 kb on - strandat 4196.735 kb on - strandat 4196.735 kb on - strandat 4196.808 kb on + strandat 4196.809 kb on - strandat 4196.838 kb on - strandat 4196.857 kb on + strandat 4197.025 kb on + strand, within QEN71_RS18855at 4197.278 kb on - strand, within QEN71_RS18855at 4197.492 kb on + strand, within QEN71_RS18855at 4197.493 kb on - strand, within QEN71_RS18855at 4197.496 kb on + strand, within QEN71_RS18855at 4197.496 kb on + strand, within QEN71_RS18855

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
remove
4,195,243 - QEN71_RS18840 0.76 -0.2
4,195,344 + +1.9
4,195,530 - -0.5
4,195,595 + -0.3
4,195,664 + -1.4
4,195,665 - +1.2
4,195,769 + +0.0
4,195,878 + QEN71_RS18845 0.46 -0.1
4,195,879 - QEN71_RS18845 0.47 -0.9
4,195,947 - QEN71_RS18845 0.76 +0.6
4,195,947 - QEN71_RS18845 0.76 -0.7
4,195,971 + QEN71_RS18845 0.87 +0.5
4,195,971 + QEN71_RS18845 0.87 -1.9
4,196,230 + QEN71_RS18850 0.31 -1.2
4,196,612 - +0.3
4,196,612 - +0.0
4,196,735 - +1.5
4,196,735 - +0.7
4,196,808 + -0.8
4,196,809 - +0.6
4,196,838 - +0.6
4,196,857 + -1.7
4,197,025 + QEN71_RS18855 0.13 -0.4
4,197,278 - QEN71_RS18855 0.24 -0.4
4,197,492 + QEN71_RS18855 0.33 +0.7
4,197,493 - QEN71_RS18855 0.33 -0.1
4,197,496 + QEN71_RS18855 0.33 -2.1
4,197,496 + QEN71_RS18855 0.33 -0.3

Or see this region's nucleotide sequence