Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS15040

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS15030 and QEN71_RS15035 are separated by 71 nucleotidesQEN71_RS15035 and QEN71_RS15040 overlap by 8 nucleotidesQEN71_RS15040 and QEN71_RS15045 are separated by 309 nucleotides QEN71_RS15030: QEN71_RS15030 - LPS-assembly protein LptD, at 3,345,752 to 3,348,007 _RS15030 QEN71_RS15035: QEN71_RS15035 - hypothetical protein, at 3,348,079 to 3,348,387 _RS15035 QEN71_RS15040: QEN71_RS15040 - hypothetical protein, at 3,348,380 to 3,348,559 _RS15040 QEN71_RS15045: QEN71_RS15045 - outer membrane protein assembly factor BamA, at 3,348,869 to 3,351,178 _RS15045 Position (kb) 3348 3349Strain fitness (log2 ratio) -2 -1 0 1 2at 3347.694 kb on + strand, within QEN71_RS15030at 3347.773 kb on - strand, within QEN71_RS15030at 3347.773 kb on - strand, within QEN71_RS15030at 3348.077 kb on + strandat 3348.078 kb on - strandat 3348.176 kb on + strand, within QEN71_RS15035at 3348.176 kb on + strand, within QEN71_RS15035at 3348.177 kb on - strand, within QEN71_RS15035at 3348.177 kb on - strand, within QEN71_RS15035at 3348.320 kb on + strand, within QEN71_RS15035at 3348.321 kb on - strand, within QEN71_RS15035at 3348.547 kb on + strandat 3348.547 kb on + strandat 3348.548 kb on - strandat 3348.774 kb on + strandat 3348.776 kb on + strandat 3348.776 kb on + strandat 3348.889 kb on + strandat 3348.889 kb on + strandat 3348.890 kb on - strandat 3348.890 kb on - strandat 3348.917 kb on + strandat 3348.918 kb on - strandat 3349.091 kb on + strandat 3349.314 kb on - strand, within QEN71_RS15045at 3349.331 kb on + strand, within QEN71_RS15045at 3349.332 kb on - strand, within QEN71_RS15045

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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3,347,694 + QEN71_RS15030 0.86 -1.0
3,347,773 - QEN71_RS15030 0.90 +2.0
3,347,773 - QEN71_RS15030 0.90 +0.8
3,348,077 + -0.5
3,348,078 - +0.2
3,348,176 + QEN71_RS15035 0.31 -1.0
3,348,176 + QEN71_RS15035 0.31 -0.9
3,348,177 - QEN71_RS15035 0.32 -1.8
3,348,177 - QEN71_RS15035 0.32 -0.0
3,348,320 + QEN71_RS15035 0.78 +0.2
3,348,321 - QEN71_RS15035 0.78 +0.5
3,348,547 + -1.4
3,348,547 + -0.0
3,348,548 - +1.4
3,348,774 + -1.2
3,348,776 + -0.4
3,348,776 + -1.1
3,348,889 + -0.2
3,348,889 + +2.0
3,348,890 - +0.6
3,348,890 - +0.3
3,348,917 + -1.8
3,348,918 - -0.6
3,349,091 + -0.1
3,349,314 - QEN71_RS15045 0.19 -0.7
3,349,331 + QEN71_RS15045 0.20 -0.0
3,349,332 - QEN71_RS15045 0.20 +0.4

Or see this region's nucleotide sequence