Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS12940

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS12935 and QEN71_RS12940 are separated by 61 nucleotidesQEN71_RS12940 and QEN71_RS12945 are separated by 87 nucleotides QEN71_RS12935: QEN71_RS12935 - glutamine synthetase family protein, at 2,894,521 to 2,895,855 _RS12935 QEN71_RS12940: QEN71_RS12940 - aspartate aminotransferase family protein, at 2,895,917 to 2,897,362 _RS12940 QEN71_RS12945: QEN71_RS12945 - polyamine ABC transporter substrate-binding protein, at 2,897,450 to 2,898,571 _RS12945 Position (kb) 2895 2896 2897 2898Strain fitness (log2 ratio) -2 -1 0 1at 2894.986 kb on - strand, within QEN71_RS12935at 2894.986 kb on - strand, within QEN71_RS12935at 2895.016 kb on + strand, within QEN71_RS12935at 2895.017 kb on - strand, within QEN71_RS12935at 2895.065 kb on - strand, within QEN71_RS12935at 2895.189 kb on + strand, within QEN71_RS12935at 2895.485 kb on - strand, within QEN71_RS12935at 2895.577 kb on + strand, within QEN71_RS12935at 2895.577 kb on + strand, within QEN71_RS12935at 2895.894 kb on + strandat 2895.895 kb on - strandat 2895.948 kb on + strandat 2895.948 kb on + strandat 2895.948 kb on + strandat 2895.949 kb on - strandat 2895.949 kb on - strandat 2896.045 kb on + strandat 2896.045 kb on + strandat 2896.118 kb on + strand, within QEN71_RS12940at 2896.118 kb on + strand, within QEN71_RS12940at 2896.119 kb on - strand, within QEN71_RS12940at 2896.119 kb on - strand, within QEN71_RS12940at 2896.244 kb on + strand, within QEN71_RS12940at 2896.249 kb on + strand, within QEN71_RS12940at 2896.337 kb on + strand, within QEN71_RS12940at 2896.493 kb on + strand, within QEN71_RS12940at 2896.494 kb on - strand, within QEN71_RS12940at 2896.495 kb on + strand, within QEN71_RS12940at 2896.495 kb on + strand, within QEN71_RS12940at 2896.496 kb on - strand, within QEN71_RS12940at 2896.529 kb on - strand, within QEN71_RS12940at 2896.550 kb on + strand, within QEN71_RS12940at 2896.709 kb on - strand, within QEN71_RS12940at 2896.709 kb on - strand, within QEN71_RS12940at 2896.713 kb on - strand, within QEN71_RS12940at 2896.873 kb on + strand, within QEN71_RS12940at 2896.956 kb on - strand, within QEN71_RS12940at 2897.564 kb on + strand, within QEN71_RS12945at 2897.565 kb on - strand, within QEN71_RS12945at 2897.567 kb on - strand, within QEN71_RS12945at 2897.567 kb on - strand, within QEN71_RS12945at 2897.723 kb on + strand, within QEN71_RS12945at 2897.723 kb on + strand, within QEN71_RS12945at 2897.724 kb on - strand, within QEN71_RS12945at 2897.911 kb on - strand, within QEN71_RS12945at 2898.038 kb on + strand, within QEN71_RS12945at 2898.039 kb on - strand, within QEN71_RS12945at 2898.090 kb on - strand, within QEN71_RS12945at 2898.143 kb on + strand, within QEN71_RS12945at 2898.163 kb on + strand, within QEN71_RS12945at 2898.243 kb on - strand, within QEN71_RS12945

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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2,894,986 - QEN71_RS12935 0.35 -0.3
2,894,986 - QEN71_RS12935 0.35 -0.4
2,895,016 + QEN71_RS12935 0.37 -0.1
2,895,017 - QEN71_RS12935 0.37 -0.4
2,895,065 - QEN71_RS12935 0.41 -2.2
2,895,189 + QEN71_RS12935 0.50 -2.1
2,895,485 - QEN71_RS12935 0.72 -0.6
2,895,577 + QEN71_RS12935 0.79 -0.1
2,895,577 + QEN71_RS12935 0.79 -0.6
2,895,894 + -1.4
2,895,895 - -0.1
2,895,948 + -0.7
2,895,948 + -1.3
2,895,948 + -0.4
2,895,949 - +1.1
2,895,949 - -0.3
2,896,045 + +0.3
2,896,045 + +0.9
2,896,118 + QEN71_RS12940 0.14 -0.9
2,896,118 + QEN71_RS12940 0.14 +0.0
2,896,119 - QEN71_RS12940 0.14 -0.1
2,896,119 - QEN71_RS12940 0.14 -0.2
2,896,244 + QEN71_RS12940 0.23 -0.9
2,896,249 + QEN71_RS12940 0.23 -1.5
2,896,337 + QEN71_RS12940 0.29 -0.1
2,896,493 + QEN71_RS12940 0.40 +0.4
2,896,494 - QEN71_RS12940 0.40 -0.9
2,896,495 + QEN71_RS12940 0.40 -0.5
2,896,495 + QEN71_RS12940 0.40 -0.4
2,896,496 - QEN71_RS12940 0.40 -0.3
2,896,529 - QEN71_RS12940 0.42 +0.1
2,896,550 + QEN71_RS12940 0.44 -0.7
2,896,709 - QEN71_RS12940 0.55 -0.3
2,896,709 - QEN71_RS12940 0.55 -0.1
2,896,713 - QEN71_RS12940 0.55 -0.4
2,896,873 + QEN71_RS12940 0.66 -1.3
2,896,956 - QEN71_RS12940 0.72 +0.1
2,897,564 + QEN71_RS12945 0.10 -0.1
2,897,565 - QEN71_RS12945 0.10 +0.5
2,897,567 - QEN71_RS12945 0.10 +0.2
2,897,567 - QEN71_RS12945 0.10 +1.5
2,897,723 + QEN71_RS12945 0.24 -1.2
2,897,723 + QEN71_RS12945 0.24 -1.3
2,897,724 - QEN71_RS12945 0.24 -0.1
2,897,911 - QEN71_RS12945 0.41 +0.4
2,898,038 + QEN71_RS12945 0.52 -0.4
2,898,039 - QEN71_RS12945 0.52 +0.7
2,898,090 - QEN71_RS12945 0.57 +0.4
2,898,143 + QEN71_RS12945 0.62 -0.2
2,898,163 + QEN71_RS12945 0.64 +0.7
2,898,243 - QEN71_RS12945 0.71 -0.6

Or see this region's nucleotide sequence