Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS12935 and QEN71_RS12940 are separated by 61 nucleotides QEN71_RS12940 and QEN71_RS12945 are separated by 87 nucleotides
QEN71_RS12935: QEN71_RS12935 - glutamine synthetase family protein, at 2,894,521 to 2,895,855
_RS12935
QEN71_RS12940: QEN71_RS12940 - aspartate aminotransferase family protein, at 2,895,917 to 2,897,362
_RS12940
QEN71_RS12945: QEN71_RS12945 - polyamine ABC transporter substrate-binding protein, at 2,897,450 to 2,898,571
_RS12945
Position (kb)
2895
2896
2897
2898 Strain fitness (log2 ratio)
-2
-1
0
1 at 2894.986 kb on - strand, within QEN71_RS12935 at 2894.986 kb on - strand, within QEN71_RS12935 at 2895.016 kb on + strand, within QEN71_RS12935 at 2895.017 kb on - strand, within QEN71_RS12935 at 2895.065 kb on - strand, within QEN71_RS12935 at 2895.189 kb on + strand, within QEN71_RS12935 at 2895.485 kb on - strand, within QEN71_RS12935 at 2895.577 kb on + strand, within QEN71_RS12935 at 2895.577 kb on + strand, within QEN71_RS12935 at 2895.894 kb on + strand at 2895.895 kb on - strand at 2895.948 kb on + strand at 2895.948 kb on + strand at 2895.948 kb on + strand at 2895.949 kb on - strand at 2895.949 kb on - strand at 2896.045 kb on + strand at 2896.045 kb on + strand at 2896.118 kb on + strand, within QEN71_RS12940 at 2896.118 kb on + strand, within QEN71_RS12940 at 2896.119 kb on - strand, within QEN71_RS12940 at 2896.119 kb on - strand, within QEN71_RS12940 at 2896.244 kb on + strand, within QEN71_RS12940 at 2896.249 kb on + strand, within QEN71_RS12940 at 2896.337 kb on + strand, within QEN71_RS12940 at 2896.493 kb on + strand, within QEN71_RS12940 at 2896.494 kb on - strand, within QEN71_RS12940 at 2896.495 kb on + strand, within QEN71_RS12940 at 2896.495 kb on + strand, within QEN71_RS12940 at 2896.496 kb on - strand, within QEN71_RS12940 at 2896.529 kb on - strand, within QEN71_RS12940 at 2896.550 kb on + strand, within QEN71_RS12940 at 2896.709 kb on - strand, within QEN71_RS12940 at 2896.709 kb on - strand, within QEN71_RS12940 at 2896.713 kb on - strand, within QEN71_RS12940 at 2896.873 kb on + strand, within QEN71_RS12940 at 2896.956 kb on - strand, within QEN71_RS12940 at 2897.564 kb on + strand, within QEN71_RS12945 at 2897.565 kb on - strand, within QEN71_RS12945 at 2897.567 kb on - strand, within QEN71_RS12945 at 2897.567 kb on - strand, within QEN71_RS12945 at 2897.723 kb on + strand, within QEN71_RS12945 at 2897.723 kb on + strand, within QEN71_RS12945 at 2897.724 kb on - strand, within QEN71_RS12945 at 2897.911 kb on - strand, within QEN71_RS12945 at 2898.038 kb on + strand, within QEN71_RS12945 at 2898.039 kb on - strand, within QEN71_RS12945 at 2898.090 kb on - strand, within QEN71_RS12945 at 2898.143 kb on + strand, within QEN71_RS12945 at 2898.163 kb on + strand, within QEN71_RS12945 at 2898.243 kb on - strand, within QEN71_RS12945
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 2,894,986 - QEN71_RS12935 0.35 -0.3 2,894,986 - QEN71_RS12935 0.35 -0.4 2,895,016 + QEN71_RS12935 0.37 -0.1 2,895,017 - QEN71_RS12935 0.37 -0.4 2,895,065 - QEN71_RS12935 0.41 -2.2 2,895,189 + QEN71_RS12935 0.50 -2.1 2,895,485 - QEN71_RS12935 0.72 -0.6 2,895,577 + QEN71_RS12935 0.79 -0.1 2,895,577 + QEN71_RS12935 0.79 -0.6 2,895,894 + -1.4 2,895,895 - -0.1 2,895,948 + -0.7 2,895,948 + -1.3 2,895,948 + -0.4 2,895,949 - +1.1 2,895,949 - -0.3 2,896,045 + +0.3 2,896,045 + +0.9 2,896,118 + QEN71_RS12940 0.14 -0.9 2,896,118 + QEN71_RS12940 0.14 +0.0 2,896,119 - QEN71_RS12940 0.14 -0.1 2,896,119 - QEN71_RS12940 0.14 -0.2 2,896,244 + QEN71_RS12940 0.23 -0.9 2,896,249 + QEN71_RS12940 0.23 -1.5 2,896,337 + QEN71_RS12940 0.29 -0.1 2,896,493 + QEN71_RS12940 0.40 +0.4 2,896,494 - QEN71_RS12940 0.40 -0.9 2,896,495 + QEN71_RS12940 0.40 -0.5 2,896,495 + QEN71_RS12940 0.40 -0.4 2,896,496 - QEN71_RS12940 0.40 -0.3 2,896,529 - QEN71_RS12940 0.42 +0.1 2,896,550 + QEN71_RS12940 0.44 -0.7 2,896,709 - QEN71_RS12940 0.55 -0.3 2,896,709 - QEN71_RS12940 0.55 -0.1 2,896,713 - QEN71_RS12940 0.55 -0.4 2,896,873 + QEN71_RS12940 0.66 -1.3 2,896,956 - QEN71_RS12940 0.72 +0.1 2,897,564 + QEN71_RS12945 0.10 -0.1 2,897,565 - QEN71_RS12945 0.10 +0.5 2,897,567 - QEN71_RS12945 0.10 +0.2 2,897,567 - QEN71_RS12945 0.10 +1.5 2,897,723 + QEN71_RS12945 0.24 -1.2 2,897,723 + QEN71_RS12945 0.24 -1.3 2,897,724 - QEN71_RS12945 0.24 -0.1 2,897,911 - QEN71_RS12945 0.41 +0.4 2,898,038 + QEN71_RS12945 0.52 -0.4 2,898,039 - QEN71_RS12945 0.52 +0.7 2,898,090 - QEN71_RS12945 0.57 +0.4 2,898,143 + QEN71_RS12945 0.62 -0.2 2,898,163 + QEN71_RS12945 0.64 +0.7 2,898,243 - QEN71_RS12945 0.71 -0.6
Or see this region's nucleotide sequence