Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS10340

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS10325 and QEN71_RS10330 overlap by 4 nucleotidesQEN71_RS10330 and QEN71_RS10335 are separated by 10 nucleotidesQEN71_RS10335 and QEN71_RS10340 overlap by 4 nucleotidesQEN71_RS10340 and QEN71_RS10345 overlap by 4 nucleotidesQEN71_RS10345 and QEN71_RS10350 are separated by 239 nucleotides QEN71_RS10325: QEN71_RS10325 - hypothetical protein, at 2,295,028 to 2,295,555 _RS10325 QEN71_RS10330: QEN71_RS10330 - hypothetical protein, at 2,295,552 to 2,295,722 _RS10330 QEN71_RS10335: QEN71_RS10335 - hypothetical protein, at 2,295,733 to 2,296,311 _RS10335 QEN71_RS10340: QEN71_RS10340 - hypothetical protein, at 2,296,308 to 2,296,679 _RS10340 QEN71_RS10345: QEN71_RS10345 - hypothetical protein, at 2,296,676 to 2,296,954 _RS10345 QEN71_RS10350: QEN71_RS10350 - hypothetical protein, at 2,297,194 to 2,297,427 _RS10350 Position (kb) 2296 2297Strain fitness (log2 ratio) -2 -1 0 1at 2295.591 kb on - strand, within QEN71_RS10330at 2295.665 kb on - strand, within QEN71_RS10330at 2295.734 kb on + strandat 2295.865 kb on - strand, within QEN71_RS10335at 2295.885 kb on + strand, within QEN71_RS10335at 2296.002 kb on - strand, within QEN71_RS10335at 2296.089 kb on - strand, within QEN71_RS10335at 2296.119 kb on - strand, within QEN71_RS10335at 2296.226 kb on + strand, within QEN71_RS10335at 2296.373 kb on + strand, within QEN71_RS10340at 2296.409 kb on - strand, within QEN71_RS10340at 2296.459 kb on + strand, within QEN71_RS10340at 2296.460 kb on - strand, within QEN71_RS10340at 2296.558 kb on + strand, within QEN71_RS10340at 2296.562 kb on + strand, within QEN71_RS10340at 2296.838 kb on - strand, within QEN71_RS10345at 2296.838 kb on - strand, within QEN71_RS10345at 2296.947 kb on - strandat 2297.010 kb on - strandat 2297.087 kb on - strandat 2297.088 kb on + strandat 2297.098 kb on + strandat 2297.099 kb on - strandat 2297.127 kb on + strandat 2297.159 kb on + strandat 2297.467 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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2,295,591 - QEN71_RS10330 0.23 +0.5
2,295,665 - QEN71_RS10330 0.66 -1.9
2,295,734 + +0.0
2,295,865 - QEN71_RS10335 0.23 +0.3
2,295,885 + QEN71_RS10335 0.26 -0.1
2,296,002 - QEN71_RS10335 0.46 -0.2
2,296,089 - QEN71_RS10335 0.61 +0.7
2,296,119 - QEN71_RS10335 0.67 +0.1
2,296,226 + QEN71_RS10335 0.85 +0.2
2,296,373 + QEN71_RS10340 0.17 -1.9
2,296,409 - QEN71_RS10340 0.27 +0.2
2,296,459 + QEN71_RS10340 0.41 +0.1
2,296,460 - QEN71_RS10340 0.41 -0.2
2,296,558 + QEN71_RS10340 0.67 -0.5
2,296,562 + QEN71_RS10340 0.68 -0.1
2,296,838 - QEN71_RS10345 0.58 -1.0
2,296,838 - QEN71_RS10345 0.58 -0.7
2,296,947 - -0.9
2,297,010 - +0.5
2,297,087 - +1.2
2,297,088 + -0.0
2,297,098 + +0.9
2,297,099 - +0.6
2,297,127 + -0.0
2,297,159 + -0.5
2,297,467 - -1.1

Or see this region's nucleotide sequence