Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS10200

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS10190 and QEN71_RS10195 overlap by 8 nucleotidesQEN71_RS10195 and QEN71_RS10200 overlap by 1 nucleotidesQEN71_RS10200 and QEN71_RS10205 overlap by 14 nucleotides QEN71_RS10190: QEN71_RS10190 - carbohydrate ABC transporter permease, at 2,271,831 to 2,272,643 _RS10190 QEN71_RS10195: QEN71_RS10195 - sugar ABC transporter permease, at 2,272,636 to 2,273,529 _RS10195 QEN71_RS10200: QEN71_RS10200 - ABC transporter ATP-binding protein, at 2,273,529 to 2,274,638 _RS10200 QEN71_RS10205: QEN71_RS10205 - ABC transporter ATP-binding protein, at 2,274,625 to 2,275,737 _RS10205 Position (kb) 2273 2274 2275Strain fitness (log2 ratio) -1 0 1at 2272.597 kb on + strandat 2272.608 kb on + strandat 2272.698 kb on - strandat 2272.796 kb on + strand, within QEN71_RS10195at 2272.934 kb on + strand, within QEN71_RS10195at 2272.983 kb on - strand, within QEN71_RS10195at 2273.016 kb on - strand, within QEN71_RS10195at 2273.099 kb on + strand, within QEN71_RS10195at 2273.099 kb on + strand, within QEN71_RS10195at 2273.106 kb on - strand, within QEN71_RS10195at 2273.185 kb on + strand, within QEN71_RS10195at 2273.185 kb on + strand, within QEN71_RS10195at 2273.429 kb on + strand, within QEN71_RS10195at 2273.482 kb on + strandat 2273.640 kb on - strand, within QEN71_RS10200at 2273.699 kb on + strand, within QEN71_RS10200at 2273.700 kb on - strand, within QEN71_RS10200at 2273.700 kb on - strand, within QEN71_RS10200at 2273.700 kb on - strand, within QEN71_RS10200at 2274.052 kb on + strand, within QEN71_RS10200at 2274.052 kb on + strand, within QEN71_RS10200at 2274.053 kb on - strand, within QEN71_RS10200at 2274.053 kb on - strand, within QEN71_RS10200at 2274.361 kb on + strand, within QEN71_RS10200at 2274.572 kb on - strandat 2274.601 kb on + strandat 2274.639 kb on - strandat 2274.716 kb on + strandat 2274.717 kb on - strandat 2274.717 kb on - strandat 2274.809 kb on + strand, within QEN71_RS10205at 2274.810 kb on - strand, within QEN71_RS10205at 2274.905 kb on - strand, within QEN71_RS10205at 2275.076 kb on + strand, within QEN71_RS10205at 2275.176 kb on - strand, within QEN71_RS10205at 2275.481 kb on + strand, within QEN71_RS10205at 2275.499 kb on + strand, within QEN71_RS10205at 2275.500 kb on - strand, within QEN71_RS10205at 2275.500 kb on - strand, within QEN71_RS10205

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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2,272,597 + -1.0
2,272,608 + -0.1
2,272,698 - +0.0
2,272,796 + QEN71_RS10195 0.18 +0.1
2,272,934 + QEN71_RS10195 0.33 +0.2
2,272,983 - QEN71_RS10195 0.39 -1.1
2,273,016 - QEN71_RS10195 0.43 +0.5
2,273,099 + QEN71_RS10195 0.52 +0.6
2,273,099 + QEN71_RS10195 0.52 +0.3
2,273,106 - QEN71_RS10195 0.53 -0.2
2,273,185 + QEN71_RS10195 0.61 +0.0
2,273,185 + QEN71_RS10195 0.61 +0.5
2,273,429 + QEN71_RS10195 0.89 -0.5
2,273,482 + +0.5
2,273,640 - QEN71_RS10200 0.10 -0.3
2,273,699 + QEN71_RS10200 0.15 -0.5
2,273,700 - QEN71_RS10200 0.15 -0.7
2,273,700 - QEN71_RS10200 0.15 -0.3
2,273,700 - QEN71_RS10200 0.15 -0.1
2,274,052 + QEN71_RS10200 0.47 -1.0
2,274,052 + QEN71_RS10200 0.47 -1.3
2,274,053 - QEN71_RS10200 0.47 -1.0
2,274,053 - QEN71_RS10200 0.47 -0.2
2,274,361 + QEN71_RS10200 0.75 -0.1
2,274,572 - -0.2
2,274,601 + -0.8
2,274,639 - +0.0
2,274,716 + -0.3
2,274,717 - -0.1
2,274,717 - -0.2
2,274,809 + QEN71_RS10205 0.17 +0.2
2,274,810 - QEN71_RS10205 0.17 +0.1
2,274,905 - QEN71_RS10205 0.25 -0.9
2,275,076 + QEN71_RS10205 0.41 +0.3
2,275,176 - QEN71_RS10205 0.50 -0.7
2,275,481 + QEN71_RS10205 0.77 -0.0
2,275,499 + QEN71_RS10205 0.79 +0.0
2,275,500 - QEN71_RS10205 0.79 -0.0
2,275,500 - QEN71_RS10205 0.79 -0.1

Or see this region's nucleotide sequence