Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS09855 and QEN71_RS09860 are separated by 9 nucleotides QEN71_RS09860 and QEN71_RS09865 are separated by 71 nucleotides QEN71_RS09865 and QEN71_RS09870 are separated by 232 nucleotides
QEN71_RS09855: QEN71_RS09855 - peptide-methionine (S)-S-oxide reductase MsrA, at 2,198,234 to 2,198,971
_RS09855
QEN71_RS09860: QEN71_RS09860 - aldo/keto reductase, at 2,198,981 to 2,199,862
_RS09860
QEN71_RS09865: QEN71_RS09865 - RidA family protein, at 2,199,934 to 2,200,335
_RS09865
QEN71_RS09870: QEN71_RS09870 - MBL fold metallo-hydrolase, at 2,200,568 to 2,201,695
_RS09870
Position (kb)
2199
2200
2201 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2199.066 kb on + strand at 2199.066 kb on + strand at 2199.066 kb on + strand at 2199.066 kb on + strand at 2199.067 kb on - strand at 2199.067 kb on - strand at 2199.067 kb on - strand at 2199.067 kb on - strand at 2199.067 kb on - strand at 2199.067 kb on - strand at 2199.275 kb on - strand, within QEN71_RS09860 at 2199.306 kb on + strand, within QEN71_RS09860 at 2199.306 kb on + strand, within QEN71_RS09860 at 2199.307 kb on - strand, within QEN71_RS09860 at 2199.307 kb on - strand, within QEN71_RS09860 at 2199.307 kb on - strand, within QEN71_RS09860 at 2199.307 kb on - strand, within QEN71_RS09860 at 2199.307 kb on - strand, within QEN71_RS09860 at 2199.307 kb on - strand, within QEN71_RS09860 at 2199.353 kb on + strand, within QEN71_RS09860 at 2199.353 kb on + strand, within QEN71_RS09860 at 2199.353 kb on + strand, within QEN71_RS09860 at 2199.354 kb on - strand, within QEN71_RS09860 at 2199.379 kb on - strand, within QEN71_RS09860 at 2199.379 kb on - strand, within QEN71_RS09860 at 2199.379 kb on - strand, within QEN71_RS09860 at 2199.394 kb on + strand, within QEN71_RS09860 at 2199.395 kb on - strand, within QEN71_RS09860 at 2199.396 kb on + strand, within QEN71_RS09860 at 2199.396 kb on + strand, within QEN71_RS09860 at 2199.396 kb on + strand, within QEN71_RS09860 at 2199.396 kb on + strand, within QEN71_RS09860 at 2199.397 kb on - strand, within QEN71_RS09860 at 2199.397 kb on - strand, within QEN71_RS09860 at 2199.397 kb on - strand, within QEN71_RS09860 at 2199.633 kb on + strand, within QEN71_RS09860 at 2199.633 kb on + strand, within QEN71_RS09860 at 2199.633 kb on + strand, within QEN71_RS09860 at 2199.633 kb on + strand, within QEN71_RS09860 at 2199.633 kb on + strand, within QEN71_RS09860 at 2199.633 kb on + strand, within QEN71_RS09860 at 2199.633 kb on + strand, within QEN71_RS09860 at 2199.633 kb on + strand, within QEN71_RS09860 at 2199.634 kb on - strand, within QEN71_RS09860 at 2199.634 kb on - strand, within QEN71_RS09860 at 2199.746 kb on - strand, within QEN71_RS09860 at 2200.046 kb on + strand, within QEN71_RS09865 at 2200.047 kb on - strand, within QEN71_RS09865 at 2200.096 kb on - strand, within QEN71_RS09865 at 2200.403 kb on + strand at 2200.403 kb on + strand at 2200.404 kb on - strand at 2200.404 kb on - strand at 2200.404 kb on - strand at 2200.404 kb on - strand at 2200.404 kb on - strand at 2200.404 kb on - strand at 2200.415 kb on + strand at 2200.415 kb on + strand at 2200.415 kb on + strand at 2200.415 kb on + strand at 2200.415 kb on + strand at 2200.416 kb on - strand at 2200.416 kb on - strand at 2200.416 kb on - strand at 2200.416 kb on - strand at 2200.421 kb on - strand at 2200.539 kb on - strand at 2200.566 kb on + strand at 2200.875 kb on + strand, within QEN71_RS09870 at 2200.875 kb on + strand, within QEN71_RS09870 at 2200.876 kb on - strand, within QEN71_RS09870 at 2200.876 kb on - strand, within QEN71_RS09870 at 2200.893 kb on + strand, within QEN71_RS09870 at 2200.894 kb on - strand, within QEN71_RS09870 at 2200.988 kb on + strand, within QEN71_RS09870 at 2200.988 kb on + strand, within QEN71_RS09870 at 2200.988 kb on + strand, within QEN71_RS09870 at 2200.989 kb on - strand, within QEN71_RS09870 at 2201.039 kb on - strand, within QEN71_RS09870 at 2201.053 kb on + strand, within QEN71_RS09870 at 2201.054 kb on - strand, within QEN71_RS09870 at 2201.250 kb on + strand, within QEN71_RS09870 at 2201.251 kb on - strand, within QEN71_RS09870 at 2201.251 kb on - strand, within QEN71_RS09870 at 2201.251 kb on - strand, within QEN71_RS09870 at 2201.251 kb on - strand, within QEN71_RS09870
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 2,199,066 + -1.5 2,199,066 + +0.4 2,199,066 + -0.1 2,199,066 + -0.9 2,199,067 - +0.4 2,199,067 - -0.4 2,199,067 - -0.1 2,199,067 - -0.4 2,199,067 - +0.2 2,199,067 - -0.9 2,199,275 - QEN71_RS09860 0.33 -0.9 2,199,306 + QEN71_RS09860 0.37 +0.4 2,199,306 + QEN71_RS09860 0.37 +1.2 2,199,307 - QEN71_RS09860 0.37 -0.5 2,199,307 - QEN71_RS09860 0.37 -0.5 2,199,307 - QEN71_RS09860 0.37 -0.7 2,199,307 - QEN71_RS09860 0.37 -0.7 2,199,307 - QEN71_RS09860 0.37 -0.9 2,199,307 - QEN71_RS09860 0.37 +2.0 2,199,353 + QEN71_RS09860 0.42 +2.4 2,199,353 + QEN71_RS09860 0.42 -0.1 2,199,353 + QEN71_RS09860 0.42 +0.5 2,199,354 - QEN71_RS09860 0.42 +0.4 2,199,379 - QEN71_RS09860 0.45 +0.4 2,199,379 - QEN71_RS09860 0.45 +0.6 2,199,379 - QEN71_RS09860 0.45 +0.8 2,199,394 + QEN71_RS09860 0.47 +2.2 2,199,395 - QEN71_RS09860 0.47 +0.0 2,199,396 + QEN71_RS09860 0.47 +0.0 2,199,396 + QEN71_RS09860 0.47 -0.8 2,199,396 + QEN71_RS09860 0.47 -0.5 2,199,396 + QEN71_RS09860 0.47 +1.6 2,199,397 - QEN71_RS09860 0.47 -0.6 2,199,397 - QEN71_RS09860 0.47 -1.3 2,199,397 - QEN71_RS09860 0.47 -1.0 2,199,633 + QEN71_RS09860 0.74 +0.2 2,199,633 + QEN71_RS09860 0.74 -0.1 2,199,633 + QEN71_RS09860 0.74 -0.6 2,199,633 + QEN71_RS09860 0.74 -0.4 2,199,633 + QEN71_RS09860 0.74 +0.9 2,199,633 + QEN71_RS09860 0.74 -0.4 2,199,633 + QEN71_RS09860 0.74 -1.1 2,199,633 + QEN71_RS09860 0.74 +0.9 2,199,634 - QEN71_RS09860 0.74 -0.4 2,199,634 - QEN71_RS09860 0.74 -0.7 2,199,746 - QEN71_RS09860 0.87 -0.8 2,200,046 + QEN71_RS09865 0.28 +0.1 2,200,047 - QEN71_RS09865 0.28 +0.2 2,200,096 - QEN71_RS09865 0.40 +0.6 2,200,403 + +0.3 2,200,403 + +1.3 2,200,404 - +1.4 2,200,404 - +0.1 2,200,404 - +0.4 2,200,404 - +0.8 2,200,404 - +0.3 2,200,404 - +1.2 2,200,415 + -2.9 2,200,415 + +0.0 2,200,415 + +0.7 2,200,415 + -0.7 2,200,415 + -0.3 2,200,416 - -0.7 2,200,416 - +0.1 2,200,416 - +1.4 2,200,416 - -1.2 2,200,421 - -0.4 2,200,539 - +0.6 2,200,566 + -0.1 2,200,875 + QEN71_RS09870 0.27 +0.1 2,200,875 + QEN71_RS09870 0.27 +0.9 2,200,876 - QEN71_RS09870 0.27 +1.3 2,200,876 - QEN71_RS09870 0.27 +0.5 2,200,893 + QEN71_RS09870 0.29 -0.6 2,200,894 - QEN71_RS09870 0.29 -0.5 2,200,988 + QEN71_RS09870 0.37 +0.5 2,200,988 + QEN71_RS09870 0.37 -0.3 2,200,988 + QEN71_RS09870 0.37 -0.6 2,200,989 - QEN71_RS09870 0.37 +0.1 2,201,039 - QEN71_RS09870 0.42 +1.4 2,201,053 + QEN71_RS09870 0.43 +0.4 2,201,054 - QEN71_RS09870 0.43 +1.5 2,201,250 + QEN71_RS09870 0.60 -1.1 2,201,251 - QEN71_RS09870 0.61 +0.0 2,201,251 - QEN71_RS09870 0.61 +0.5 2,201,251 - QEN71_RS09870 0.61 +0.9 2,201,251 - QEN71_RS09870 0.61 +0.2
Or see this region's nucleotide sequence