Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS09395 and QEN71_RS09400 are separated by 246 nucleotides QEN71_RS09400 and QEN71_RS09405 are separated by 113 nucleotides
QEN71_RS09395: QEN71_RS09395 - ABC transporter ATP-binding protein, at 2,101,351 to 2,102,439
_RS09395
QEN71_RS09400: QEN71_RS09400 - LacI family DNA-binding transcriptional regulator, at 2,102,686 to 2,103,705
_RS09400
QEN71_RS09405: QEN71_RS09405 - extracellular solute-binding protein, at 2,103,819 to 2,105,150
_RS09405
Position (kb)
2102
2103
2104 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2101.984 kb on - strand, within QEN71_RS09395 at 2102.014 kb on + strand, within QEN71_RS09395 at 2102.015 kb on - strand, within QEN71_RS09395 at 2102.125 kb on - strand, within QEN71_RS09395 at 2102.450 kb on + strand at 2102.568 kb on + strand at 2103.164 kb on - strand, within QEN71_RS09400 at 2103.401 kb on + strand, within QEN71_RS09400 at 2103.433 kb on + strand, within QEN71_RS09400 at 2103.433 kb on + strand, within QEN71_RS09400 at 2103.434 kb on - strand, within QEN71_RS09400 at 2103.679 kb on + strand at 2103.679 kb on + strand at 2103.818 kb on + strand at 2103.818 kb on + strand at 2103.819 kb on - strand at 2103.824 kb on - strand at 2103.824 kb on - strand at 2103.824 kb on - strand at 2103.830 kb on + strand at 2103.830 kb on + strand at 2103.830 kb on + strand at 2104.026 kb on + strand, within QEN71_RS09405 at 2104.128 kb on + strand, within QEN71_RS09405 at 2104.129 kb on - strand, within QEN71_RS09405 at 2104.129 kb on - strand, within QEN71_RS09405 at 2104.233 kb on + strand, within QEN71_RS09405 at 2104.234 kb on - strand, within QEN71_RS09405 at 2104.276 kb on - strand, within QEN71_RS09405 at 2104.431 kb on + strand, within QEN71_RS09405 at 2104.581 kb on + strand, within QEN71_RS09405 at 2104.629 kb on + strand, within QEN71_RS09405
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 2,101,984 - QEN71_RS09395 0.58 -1.2 2,102,014 + QEN71_RS09395 0.61 +0.4 2,102,015 - QEN71_RS09395 0.61 -0.8 2,102,125 - QEN71_RS09395 0.71 -0.4 2,102,450 + -1.0 2,102,568 + -0.1 2,103,164 - QEN71_RS09400 0.47 +0.1 2,103,401 + QEN71_RS09400 0.70 -0.5 2,103,433 + QEN71_RS09400 0.73 -0.2 2,103,433 + QEN71_RS09400 0.73 +0.1 2,103,434 - QEN71_RS09400 0.73 +0.1 2,103,679 + +1.0 2,103,679 + -0.1 2,103,818 + +0.9 2,103,818 + -1.8 2,103,819 - +0.4 2,103,824 - -0.1 2,103,824 - -0.8 2,103,824 - +1.2 2,103,830 + +0.1 2,103,830 + +0.0 2,103,830 + -0.8 2,104,026 + QEN71_RS09405 0.16 -0.3 2,104,128 + QEN71_RS09405 0.23 +0.1 2,104,129 - QEN71_RS09405 0.23 -0.1 2,104,129 - QEN71_RS09405 0.23 +0.7 2,104,233 + QEN71_RS09405 0.31 +0.9 2,104,234 - QEN71_RS09405 0.31 +1.9 2,104,276 - QEN71_RS09405 0.34 +0.1 2,104,431 + QEN71_RS09405 0.46 +1.6 2,104,581 + QEN71_RS09405 0.57 -0.4 2,104,629 + QEN71_RS09405 0.61 +0.3
Or see this region's nucleotide sequence