Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS09400

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS09395 and QEN71_RS09400 are separated by 246 nucleotidesQEN71_RS09400 and QEN71_RS09405 are separated by 113 nucleotides QEN71_RS09395: QEN71_RS09395 - ABC transporter ATP-binding protein, at 2,101,351 to 2,102,439 _RS09395 QEN71_RS09400: QEN71_RS09400 - LacI family DNA-binding transcriptional regulator, at 2,102,686 to 2,103,705 _RS09400 QEN71_RS09405: QEN71_RS09405 - extracellular solute-binding protein, at 2,103,819 to 2,105,150 _RS09405 Position (kb) 2102 2103 2104Strain fitness (log2 ratio) -2 -1 0 1 2at 2101.984 kb on - strand, within QEN71_RS09395at 2102.014 kb on + strand, within QEN71_RS09395at 2102.015 kb on - strand, within QEN71_RS09395at 2102.125 kb on - strand, within QEN71_RS09395at 2102.450 kb on + strandat 2102.568 kb on + strandat 2103.164 kb on - strand, within QEN71_RS09400at 2103.401 kb on + strand, within QEN71_RS09400at 2103.433 kb on + strand, within QEN71_RS09400at 2103.433 kb on + strand, within QEN71_RS09400at 2103.434 kb on - strand, within QEN71_RS09400at 2103.679 kb on + strandat 2103.679 kb on + strandat 2103.818 kb on + strandat 2103.818 kb on + strandat 2103.819 kb on - strandat 2103.824 kb on - strandat 2103.824 kb on - strandat 2103.824 kb on - strandat 2103.830 kb on + strandat 2103.830 kb on + strandat 2103.830 kb on + strandat 2104.026 kb on + strand, within QEN71_RS09405at 2104.128 kb on + strand, within QEN71_RS09405at 2104.129 kb on - strand, within QEN71_RS09405at 2104.129 kb on - strand, within QEN71_RS09405at 2104.233 kb on + strand, within QEN71_RS09405at 2104.234 kb on - strand, within QEN71_RS09405at 2104.276 kb on - strand, within QEN71_RS09405at 2104.431 kb on + strand, within QEN71_RS09405at 2104.581 kb on + strand, within QEN71_RS09405at 2104.629 kb on + strand, within QEN71_RS09405

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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2,101,984 - QEN71_RS09395 0.58 -1.2
2,102,014 + QEN71_RS09395 0.61 +0.4
2,102,015 - QEN71_RS09395 0.61 -0.8
2,102,125 - QEN71_RS09395 0.71 -0.4
2,102,450 + -1.0
2,102,568 + -0.1
2,103,164 - QEN71_RS09400 0.47 +0.1
2,103,401 + QEN71_RS09400 0.70 -0.5
2,103,433 + QEN71_RS09400 0.73 -0.2
2,103,433 + QEN71_RS09400 0.73 +0.1
2,103,434 - QEN71_RS09400 0.73 +0.1
2,103,679 + +1.0
2,103,679 + -0.1
2,103,818 + +0.9
2,103,818 + -1.8
2,103,819 - +0.4
2,103,824 - -0.1
2,103,824 - -0.8
2,103,824 - +1.2
2,103,830 + +0.1
2,103,830 + +0.0
2,103,830 + -0.8
2,104,026 + QEN71_RS09405 0.16 -0.3
2,104,128 + QEN71_RS09405 0.23 +0.1
2,104,129 - QEN71_RS09405 0.23 -0.1
2,104,129 - QEN71_RS09405 0.23 +0.7
2,104,233 + QEN71_RS09405 0.31 +0.9
2,104,234 - QEN71_RS09405 0.31 +1.9
2,104,276 - QEN71_RS09405 0.34 +0.1
2,104,431 + QEN71_RS09405 0.46 +1.6
2,104,581 + QEN71_RS09405 0.57 -0.4
2,104,629 + QEN71_RS09405 0.61 +0.3

Or see this region's nucleotide sequence