Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS09130 and QEN71_RS09135 overlap by 4 nucleotides QEN71_RS09135 and QEN71_RS09140 are separated by 5 nucleotides
QEN71_RS09130: QEN71_RS09130 - ABC transporter permease, at 2,042,969 to 2,044,006
_RS09130
QEN71_RS09135: QEN71_RS09135 - galactofuranose ABC transporter, permease protein YjfF, at 2,044,003 to 2,045,100
_RS09135
QEN71_RS09140: QEN71_RS09140 - AraC family transcriptional regulator, at 2,045,106 to 2,046,086
_RS09140
Position (kb)
2044
2045
2046 Strain fitness (log2 ratio)
-1
0
1 at 2043.270 kb on + strand, within QEN71_RS09130 at 2043.833 kb on + strand, within QEN71_RS09130 at 2044.012 kb on - strand at 2044.012 kb on - strand at 2044.012 kb on - strand at 2044.012 kb on - strand at 2044.012 kb on - strand at 2044.048 kb on - strand at 2044.555 kb on + strand, within QEN71_RS09135 at 2044.556 kb on - strand, within QEN71_RS09135 at 2044.556 kb on - strand, within QEN71_RS09135 at 2044.556 kb on - strand, within QEN71_RS09135 at 2044.556 kb on - strand, within QEN71_RS09135 at 2044.556 kb on - strand, within QEN71_RS09135 at 2044.556 kb on - strand, within QEN71_RS09135 at 2044.591 kb on + strand, within QEN71_RS09135 at 2044.591 kb on + strand, within QEN71_RS09135 at 2044.592 kb on - strand, within QEN71_RS09135 at 2044.592 kb on - strand, within QEN71_RS09135 at 2044.663 kb on + strand, within QEN71_RS09135 at 2044.664 kb on - strand, within QEN71_RS09135 at 2044.664 kb on - strand, within QEN71_RS09135 at 2044.715 kb on - strand, within QEN71_RS09135 at 2044.715 kb on - strand, within QEN71_RS09135 at 2044.869 kb on + strand, within QEN71_RS09135 at 2045.175 kb on + strand at 2045.397 kb on + strand, within QEN71_RS09140 at 2045.648 kb on + strand, within QEN71_RS09140 at 2045.648 kb on + strand, within QEN71_RS09140 at 2045.648 kb on + strand, within QEN71_RS09140 at 2045.649 kb on - strand, within QEN71_RS09140 at 2045.649 kb on - strand, within QEN71_RS09140 at 2045.649 kb on - strand, within QEN71_RS09140 at 2046.013 kb on + strand at 2046.013 kb on + strand at 2046.014 kb on - strand at 2046.014 kb on - strand at 2046.097 kb on + strand at 2046.098 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 2,043,270 + QEN71_RS09130 0.29 +0.3 2,043,833 + QEN71_RS09130 0.83 +0.2 2,044,012 - -1.6 2,044,012 - +0.2 2,044,012 - +1.7 2,044,012 - -0.8 2,044,012 - -1.3 2,044,048 - -0.1 2,044,555 + QEN71_RS09135 0.50 +0.1 2,044,556 - QEN71_RS09135 0.50 +0.9 2,044,556 - QEN71_RS09135 0.50 -0.7 2,044,556 - QEN71_RS09135 0.50 -0.3 2,044,556 - QEN71_RS09135 0.50 +0.4 2,044,556 - QEN71_RS09135 0.50 -1.6 2,044,556 - QEN71_RS09135 0.50 -0.7 2,044,591 + QEN71_RS09135 0.54 +0.2 2,044,591 + QEN71_RS09135 0.54 +0.8 2,044,592 - QEN71_RS09135 0.54 -0.7 2,044,592 - QEN71_RS09135 0.54 +0.1 2,044,663 + QEN71_RS09135 0.60 -0.8 2,044,664 - QEN71_RS09135 0.60 +1.2 2,044,664 - QEN71_RS09135 0.60 +0.3 2,044,715 - QEN71_RS09135 0.65 -0.1 2,044,715 - QEN71_RS09135 0.65 -0.2 2,044,869 + QEN71_RS09135 0.79 -0.1 2,045,175 + -0.4 2,045,397 + QEN71_RS09140 0.30 -0.3 2,045,648 + QEN71_RS09140 0.55 -0.4 2,045,648 + QEN71_RS09140 0.55 -0.5 2,045,648 + QEN71_RS09140 0.55 +1.0 2,045,649 - QEN71_RS09140 0.55 -0.1 2,045,649 - QEN71_RS09140 0.55 -0.3 2,045,649 - QEN71_RS09140 0.55 -0.4 2,046,013 + -0.1 2,046,013 + -0.1 2,046,014 - -0.3 2,046,014 - -0.8 2,046,097 + -0.5 2,046,098 - -0.3
Or see this region's nucleotide sequence