Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS09135

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS09130 and QEN71_RS09135 overlap by 4 nucleotidesQEN71_RS09135 and QEN71_RS09140 are separated by 5 nucleotides QEN71_RS09130: QEN71_RS09130 - ABC transporter permease, at 2,042,969 to 2,044,006 _RS09130 QEN71_RS09135: QEN71_RS09135 - galactofuranose ABC transporter, permease protein YjfF, at 2,044,003 to 2,045,100 _RS09135 QEN71_RS09140: QEN71_RS09140 - AraC family transcriptional regulator, at 2,045,106 to 2,046,086 _RS09140 Position (kb) 2044 2045 2046Strain fitness (log2 ratio) -1 0 1at 2043.270 kb on + strand, within QEN71_RS09130at 2043.833 kb on + strand, within QEN71_RS09130at 2044.012 kb on - strandat 2044.012 kb on - strandat 2044.012 kb on - strandat 2044.012 kb on - strandat 2044.012 kb on - strandat 2044.048 kb on - strandat 2044.555 kb on + strand, within QEN71_RS09135at 2044.556 kb on - strand, within QEN71_RS09135at 2044.556 kb on - strand, within QEN71_RS09135at 2044.556 kb on - strand, within QEN71_RS09135at 2044.556 kb on - strand, within QEN71_RS09135at 2044.556 kb on - strand, within QEN71_RS09135at 2044.556 kb on - strand, within QEN71_RS09135at 2044.591 kb on + strand, within QEN71_RS09135at 2044.591 kb on + strand, within QEN71_RS09135at 2044.592 kb on - strand, within QEN71_RS09135at 2044.592 kb on - strand, within QEN71_RS09135at 2044.663 kb on + strand, within QEN71_RS09135at 2044.664 kb on - strand, within QEN71_RS09135at 2044.664 kb on - strand, within QEN71_RS09135at 2044.715 kb on - strand, within QEN71_RS09135at 2044.715 kb on - strand, within QEN71_RS09135at 2044.869 kb on + strand, within QEN71_RS09135at 2045.175 kb on + strandat 2045.397 kb on + strand, within QEN71_RS09140at 2045.648 kb on + strand, within QEN71_RS09140at 2045.648 kb on + strand, within QEN71_RS09140at 2045.648 kb on + strand, within QEN71_RS09140at 2045.649 kb on - strand, within QEN71_RS09140at 2045.649 kb on - strand, within QEN71_RS09140at 2045.649 kb on - strand, within QEN71_RS09140at 2046.013 kb on + strandat 2046.013 kb on + strandat 2046.014 kb on - strandat 2046.014 kb on - strandat 2046.097 kb on + strandat 2046.098 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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2,043,270 + QEN71_RS09130 0.29 +0.3
2,043,833 + QEN71_RS09130 0.83 +0.2
2,044,012 - -1.6
2,044,012 - +0.2
2,044,012 - +1.7
2,044,012 - -0.8
2,044,012 - -1.3
2,044,048 - -0.1
2,044,555 + QEN71_RS09135 0.50 +0.1
2,044,556 - QEN71_RS09135 0.50 +0.9
2,044,556 - QEN71_RS09135 0.50 -0.7
2,044,556 - QEN71_RS09135 0.50 -0.3
2,044,556 - QEN71_RS09135 0.50 +0.4
2,044,556 - QEN71_RS09135 0.50 -1.6
2,044,556 - QEN71_RS09135 0.50 -0.7
2,044,591 + QEN71_RS09135 0.54 +0.2
2,044,591 + QEN71_RS09135 0.54 +0.8
2,044,592 - QEN71_RS09135 0.54 -0.7
2,044,592 - QEN71_RS09135 0.54 +0.1
2,044,663 + QEN71_RS09135 0.60 -0.8
2,044,664 - QEN71_RS09135 0.60 +1.2
2,044,664 - QEN71_RS09135 0.60 +0.3
2,044,715 - QEN71_RS09135 0.65 -0.1
2,044,715 - QEN71_RS09135 0.65 -0.2
2,044,869 + QEN71_RS09135 0.79 -0.1
2,045,175 + -0.4
2,045,397 + QEN71_RS09140 0.30 -0.3
2,045,648 + QEN71_RS09140 0.55 -0.4
2,045,648 + QEN71_RS09140 0.55 -0.5
2,045,648 + QEN71_RS09140 0.55 +1.0
2,045,649 - QEN71_RS09140 0.55 -0.1
2,045,649 - QEN71_RS09140 0.55 -0.3
2,045,649 - QEN71_RS09140 0.55 -0.4
2,046,013 + -0.1
2,046,013 + -0.1
2,046,014 - -0.3
2,046,014 - -0.8
2,046,097 + -0.5
2,046,098 - -0.3

Or see this region's nucleotide sequence