Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS09130

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS09125 and QEN71_RS09130 are separated by 8 nucleotidesQEN71_RS09130 and QEN71_RS09135 overlap by 4 nucleotides QEN71_RS09125: QEN71_RS09125 - sugar ABC transporter ATP-binding protein, at 2,041,446 to 2,042,960 _RS09125 QEN71_RS09130: QEN71_RS09130 - ABC transporter permease, at 2,042,969 to 2,044,006 _RS09130 QEN71_RS09135: QEN71_RS09135 - galactofuranose ABC transporter, permease protein YjfF, at 2,044,003 to 2,045,100 _RS09135 Position (kb) 2042 2043 2044 2045Strain fitness (log2 ratio) -1 0 1at 2042.062 kb on - strand, within QEN71_RS09125at 2042.312 kb on - strand, within QEN71_RS09125at 2042.463 kb on + strand, within QEN71_RS09125at 2042.464 kb on - strand, within QEN71_RS09125at 2042.598 kb on - strand, within QEN71_RS09125at 2042.598 kb on - strand, within QEN71_RS09125at 2042.598 kb on - strand, within QEN71_RS09125at 2042.598 kb on - strand, within QEN71_RS09125at 2042.601 kb on + strand, within QEN71_RS09125at 2042.723 kb on - strand, within QEN71_RS09125at 2042.932 kb on - strandat 2042.951 kb on + strandat 2042.951 kb on + strandat 2042.952 kb on - strandat 2043.270 kb on + strand, within QEN71_RS09130at 2043.833 kb on + strand, within QEN71_RS09130at 2044.012 kb on - strandat 2044.012 kb on - strandat 2044.012 kb on - strandat 2044.012 kb on - strandat 2044.012 kb on - strandat 2044.048 kb on - strandat 2044.555 kb on + strand, within QEN71_RS09135at 2044.556 kb on - strand, within QEN71_RS09135at 2044.556 kb on - strand, within QEN71_RS09135at 2044.556 kb on - strand, within QEN71_RS09135at 2044.556 kb on - strand, within QEN71_RS09135at 2044.556 kb on - strand, within QEN71_RS09135at 2044.556 kb on - strand, within QEN71_RS09135at 2044.591 kb on + strand, within QEN71_RS09135at 2044.591 kb on + strand, within QEN71_RS09135at 2044.592 kb on - strand, within QEN71_RS09135at 2044.592 kb on - strand, within QEN71_RS09135at 2044.663 kb on + strand, within QEN71_RS09135at 2044.664 kb on - strand, within QEN71_RS09135at 2044.664 kb on - strand, within QEN71_RS09135at 2044.715 kb on - strand, within QEN71_RS09135at 2044.715 kb on - strand, within QEN71_RS09135at 2044.869 kb on + strand, within QEN71_RS09135

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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2,042,062 - QEN71_RS09125 0.41 -1.3
2,042,312 - QEN71_RS09125 0.57 +1.6
2,042,463 + QEN71_RS09125 0.67 -0.1
2,042,464 - QEN71_RS09125 0.67 +1.0
2,042,598 - QEN71_RS09125 0.76 -0.7
2,042,598 - QEN71_RS09125 0.76 -0.2
2,042,598 - QEN71_RS09125 0.76 -0.1
2,042,598 - QEN71_RS09125 0.76 -0.6
2,042,601 + QEN71_RS09125 0.76 -0.1
2,042,723 - QEN71_RS09125 0.84 -1.2
2,042,932 - +0.3
2,042,951 + -1.2
2,042,951 + +1.2
2,042,952 - -0.5
2,043,270 + QEN71_RS09130 0.29 +0.3
2,043,833 + QEN71_RS09130 0.83 +0.2
2,044,012 - -1.6
2,044,012 - +0.2
2,044,012 - +1.7
2,044,012 - -0.8
2,044,012 - -1.3
2,044,048 - -0.1
2,044,555 + QEN71_RS09135 0.50 +0.1
2,044,556 - QEN71_RS09135 0.50 +0.9
2,044,556 - QEN71_RS09135 0.50 -0.7
2,044,556 - QEN71_RS09135 0.50 -0.3
2,044,556 - QEN71_RS09135 0.50 +0.4
2,044,556 - QEN71_RS09135 0.50 -1.6
2,044,556 - QEN71_RS09135 0.50 -0.7
2,044,591 + QEN71_RS09135 0.54 +0.2
2,044,591 + QEN71_RS09135 0.54 +0.8
2,044,592 - QEN71_RS09135 0.54 -0.7
2,044,592 - QEN71_RS09135 0.54 +0.1
2,044,663 + QEN71_RS09135 0.60 -0.8
2,044,664 - QEN71_RS09135 0.60 +1.2
2,044,664 - QEN71_RS09135 0.60 +0.3
2,044,715 - QEN71_RS09135 0.65 -0.1
2,044,715 - QEN71_RS09135 0.65 -0.2
2,044,869 + QEN71_RS09135 0.79 -0.1

Or see this region's nucleotide sequence