Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS08105

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS08100 and QEN71_RS08105 are separated by 390 nucleotidesQEN71_RS08105 and QEN71_RS08110 are separated by 243 nucleotides QEN71_RS08100: QEN71_RS08100 - polysaccharide pyruvyl transferase family protein, at 1,793,943 to 1,795,145 _RS08100 QEN71_RS08105: QEN71_RS08105 - hypothetical protein, at 1,795,536 to 1,795,748 _RS08105 QEN71_RS08110: QEN71_RS08110 - alpha/beta hydrolase, at 1,795,992 to 1,796,813 _RS08110 Position (kb) 1795 1796Strain fitness (log2 ratio) -2 -1 0 1at 1794.656 kb on + strand, within QEN71_RS08100at 1794.787 kb on + strand, within QEN71_RS08100at 1794.788 kb on - strand, within QEN71_RS08100at 1794.789 kb on - strand, within QEN71_RS08100at 1794.934 kb on - strand, within QEN71_RS08100at 1795.234 kb on - strandat 1795.268 kb on + strandat 1795.268 kb on + strandat 1795.268 kb on + strandat 1795.269 kb on - strandat 1795.269 kb on - strandat 1795.296 kb on + strandat 1795.297 kb on - strandat 1795.311 kb on + strandat 1795.312 kb on - strandat 1795.541 kb on + strandat 1795.541 kb on + strandat 1795.542 kb on - strandat 1795.542 kb on - strandat 1795.545 kb on + strandat 1795.546 kb on - strandat 1795.563 kb on - strand, within QEN71_RS08105at 1795.582 kb on - strand, within QEN71_RS08105at 1795.582 kb on - strand, within QEN71_RS08105at 1795.834 kb on + strandat 1795.834 kb on + strandat 1795.872 kb on + strandat 1795.872 kb on + strandat 1795.872 kb on + strandat 1795.873 kb on - strandat 1795.873 kb on - strandat 1796.031 kb on + strandat 1796.032 kb on - strandat 1796.208 kb on + strand, within QEN71_RS08110at 1796.208 kb on + strand, within QEN71_RS08110at 1796.301 kb on + strand, within QEN71_RS08110at 1796.457 kb on + strand, within QEN71_RS08110at 1796.571 kb on + strand, within QEN71_RS08110at 1796.734 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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1,794,656 + QEN71_RS08100 0.59 -0.2
1,794,787 + QEN71_RS08100 0.70 -0.7
1,794,788 - QEN71_RS08100 0.70 +0.1
1,794,789 - QEN71_RS08100 0.70 -1.0
1,794,934 - QEN71_RS08100 0.82 -1.0
1,795,234 - -2.6
1,795,268 + +0.8
1,795,268 + -0.2
1,795,268 + +1.0
1,795,269 - -0.1
1,795,269 - +0.1
1,795,296 + +1.0
1,795,297 - -1.1
1,795,311 + -1.3
1,795,312 - +0.2
1,795,541 + -0.2
1,795,541 + -0.6
1,795,542 - +0.2
1,795,542 - -0.8
1,795,545 + +0.4
1,795,546 - -1.0
1,795,563 - QEN71_RS08105 0.13 -0.6
1,795,582 - QEN71_RS08105 0.22 +0.3
1,795,582 - QEN71_RS08105 0.22 -0.6
1,795,834 + -0.1
1,795,834 + +0.4
1,795,872 + +0.3
1,795,872 + +1.0
1,795,872 + -0.5
1,795,873 - -0.4
1,795,873 - +0.7
1,796,031 + -1.3
1,796,032 - -0.4
1,796,208 + QEN71_RS08110 0.26 -0.1
1,796,208 + QEN71_RS08110 0.26 +0.5
1,796,301 + QEN71_RS08110 0.38 -0.0
1,796,457 + QEN71_RS08110 0.57 +0.1
1,796,571 + QEN71_RS08110 0.70 +0.4
1,796,734 - +0.7

Or see this region's nucleotide sequence