Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS07545

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS07540 and QEN71_RS07545 are separated by 2 nucleotidesQEN71_RS07545 and QEN71_RS07550 are separated by 146 nucleotides QEN71_RS07540: QEN71_RS07540 - LysR family transcriptional regulator, at 1,670,711 to 1,671,631 _RS07540 QEN71_RS07545: QEN71_RS07545 - PDR/VanB family oxidoreductase, at 1,671,634 to 1,672,602 _RS07545 QEN71_RS07550: QEN71_RS07550 - MDR family oxidoreductase, at 1,672,749 to 1,673,729 _RS07550 Position (kb) 1671 1672 1673Strain fitness (log2 ratio) -1 0 1at 1670.682 kb on + strandat 1670.683 kb on - strandat 1670.828 kb on + strand, within QEN71_RS07540at 1671.044 kb on + strand, within QEN71_RS07540at 1671.044 kb on + strand, within QEN71_RS07540at 1671.045 kb on - strand, within QEN71_RS07540at 1671.145 kb on + strand, within QEN71_RS07540at 1671.146 kb on - strand, within QEN71_RS07540at 1671.146 kb on - strand, within QEN71_RS07540at 1671.224 kb on + strand, within QEN71_RS07540at 1671.224 kb on + strand, within QEN71_RS07540at 1671.224 kb on + strand, within QEN71_RS07540at 1671.224 kb on + strand, within QEN71_RS07540at 1671.224 kb on + strand, within QEN71_RS07540at 1671.224 kb on + strand, within QEN71_RS07540at 1671.224 kb on + strand, within QEN71_RS07540at 1671.224 kb on + strand, within QEN71_RS07540at 1671.225 kb on - strand, within QEN71_RS07540at 1671.225 kb on - strand, within QEN71_RS07540at 1671.225 kb on - strand, within QEN71_RS07540at 1671.225 kb on - strand, within QEN71_RS07540at 1671.225 kb on - strand, within QEN71_RS07540at 1671.343 kb on - strand, within QEN71_RS07540at 1671.379 kb on + strand, within QEN71_RS07540at 1671.380 kb on - strand, within QEN71_RS07540at 1671.500 kb on + strand, within QEN71_RS07540at 1671.500 kb on + strand, within QEN71_RS07540at 1671.630 kb on - strandat 1671.653 kb on - strandat 1671.778 kb on + strand, within QEN71_RS07545at 1671.803 kb on - strand, within QEN71_RS07545at 1672.025 kb on + strand, within QEN71_RS07545at 1672.025 kb on + strand, within QEN71_RS07545at 1672.025 kb on + strand, within QEN71_RS07545at 1672.026 kb on - strand, within QEN71_RS07545at 1672.181 kb on + strand, within QEN71_RS07545at 1672.182 kb on - strand, within QEN71_RS07545at 1672.242 kb on + strand, within QEN71_RS07545at 1672.242 kb on + strand, within QEN71_RS07545at 1672.243 kb on - strand, within QEN71_RS07545at 1672.243 kb on - strand, within QEN71_RS07545at 1672.496 kb on + strand, within QEN71_RS07545at 1672.496 kb on + strand, within QEN71_RS07545at 1672.496 kb on + strand, within QEN71_RS07545at 1672.496 kb on + strand, within QEN71_RS07545at 1672.497 kb on - strand, within QEN71_RS07545at 1672.497 kb on - strand, within QEN71_RS07545at 1672.497 kb on - strand, within QEN71_RS07545at 1672.667 kb on + strandat 1672.668 kb on - strandat 1672.668 kb on - strandat 1672.668 kb on - strandat 1672.668 kb on - strandat 1672.883 kb on + strand, within QEN71_RS07550at 1672.883 kb on + strand, within QEN71_RS07550at 1672.883 kb on + strand, within QEN71_RS07550at 1673.344 kb on + strand, within QEN71_RS07550at 1673.345 kb on - strand, within QEN71_RS07550at 1673.468 kb on - strand, within QEN71_RS07550

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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1,670,682 + +0.2
1,670,683 - -0.4
1,670,828 + QEN71_RS07540 0.13 -0.1
1,671,044 + QEN71_RS07540 0.36 +1.3
1,671,044 + QEN71_RS07540 0.36 -0.6
1,671,045 - QEN71_RS07540 0.36 -0.8
1,671,145 + QEN71_RS07540 0.47 -0.0
1,671,146 - QEN71_RS07540 0.47 -0.3
1,671,146 - QEN71_RS07540 0.47 -0.5
1,671,224 + QEN71_RS07540 0.56 +0.3
1,671,224 + QEN71_RS07540 0.56 -1.0
1,671,224 + QEN71_RS07540 0.56 -0.0
1,671,224 + QEN71_RS07540 0.56 +1.4
1,671,224 + QEN71_RS07540 0.56 +0.6
1,671,224 + QEN71_RS07540 0.56 -0.7
1,671,224 + QEN71_RS07540 0.56 -0.9
1,671,224 + QEN71_RS07540 0.56 -0.1
1,671,225 - QEN71_RS07540 0.56 +0.5
1,671,225 - QEN71_RS07540 0.56 -0.3
1,671,225 - QEN71_RS07540 0.56 +0.4
1,671,225 - QEN71_RS07540 0.56 -0.2
1,671,225 - QEN71_RS07540 0.56 +0.0
1,671,343 - QEN71_RS07540 0.69 -1.6
1,671,379 + QEN71_RS07540 0.73 +1.3
1,671,380 - QEN71_RS07540 0.73 -0.1
1,671,500 + QEN71_RS07540 0.86 +0.4
1,671,500 + QEN71_RS07540 0.86 +0.3
1,671,630 - -0.9
1,671,653 - +0.6
1,671,778 + QEN71_RS07545 0.15 -0.0
1,671,803 - QEN71_RS07545 0.17 +0.1
1,672,025 + QEN71_RS07545 0.40 -0.3
1,672,025 + QEN71_RS07545 0.40 -0.0
1,672,025 + QEN71_RS07545 0.40 +0.0
1,672,026 - QEN71_RS07545 0.40 -0.4
1,672,181 + QEN71_RS07545 0.56 +0.2
1,672,182 - QEN71_RS07545 0.57 -0.2
1,672,242 + QEN71_RS07545 0.63 +0.4
1,672,242 + QEN71_RS07545 0.63 -1.2
1,672,243 - QEN71_RS07545 0.63 -0.1
1,672,243 - QEN71_RS07545 0.63 +0.6
1,672,496 + QEN71_RS07545 0.89 +0.3
1,672,496 + QEN71_RS07545 0.89 +0.6
1,672,496 + QEN71_RS07545 0.89 -0.8
1,672,496 + QEN71_RS07545 0.89 -1.5
1,672,497 - QEN71_RS07545 0.89 -0.8
1,672,497 - QEN71_RS07545 0.89 +0.6
1,672,497 - QEN71_RS07545 0.89 +0.4
1,672,667 + +0.1
1,672,668 - -0.4
1,672,668 - -0.1
1,672,668 - -0.0
1,672,668 - +0.6
1,672,883 + QEN71_RS07550 0.14 -1.0
1,672,883 + QEN71_RS07550 0.14 -0.8
1,672,883 + QEN71_RS07550 0.14 -0.8
1,673,344 + QEN71_RS07550 0.61 +0.5
1,673,345 - QEN71_RS07550 0.61 -0.4
1,673,468 - QEN71_RS07550 0.73 -0.2

Or see this region's nucleotide sequence