Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS07345

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS07335 and QEN71_RS07340 are separated by 82 nucleotidesQEN71_RS07340 and QEN71_RS07345 are separated by 50 nucleotidesQEN71_RS07345 and QEN71_RS07350 overlap by 4 nucleotides QEN71_RS07335: QEN71_RS07335 - sugar ABC transporter substrate-binding protein, at 1,629,304 to 1,630,260 _RS07335 QEN71_RS07340: QEN71_RS07340 - hypothetical protein, at 1,630,343 to 1,630,540 _RS07340 QEN71_RS07345: QEN71_RS07345 - sugar ABC transporter ATP-binding protein, at 1,630,591 to 1,632,201 _RS07345 QEN71_RS07350: QEN71_RS07350 - ABC transporter permease, at 1,632,198 to 1,633,244 _RS07350 Position (kb) 1630 1631 1632 1633Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1629.629 kb on + strand, within QEN71_RS07335at 1629.775 kb on + strand, within QEN71_RS07335at 1629.775 kb on + strand, within QEN71_RS07335at 1629.776 kb on - strand, within QEN71_RS07335at 1629.776 kb on - strand, within QEN71_RS07335at 1630.063 kb on + strand, within QEN71_RS07335at 1630.063 kb on + strand, within QEN71_RS07335at 1630.063 kb on + strand, within QEN71_RS07335at 1630.063 kb on + strand, within QEN71_RS07335at 1630.063 kb on + strand, within QEN71_RS07335at 1630.064 kb on - strand, within QEN71_RS07335at 1630.064 kb on - strand, within QEN71_RS07335at 1630.064 kb on - strand, within QEN71_RS07335at 1630.064 kb on - strand, within QEN71_RS07335at 1630.064 kb on - strand, within QEN71_RS07335at 1630.076 kb on - strand, within QEN71_RS07335at 1630.076 kb on - strand, within QEN71_RS07335at 1630.141 kb on + strand, within QEN71_RS07335at 1630.141 kb on + strand, within QEN71_RS07335at 1630.258 kb on + strandat 1630.258 kb on + strandat 1630.322 kb on - strandat 1630.322 kb on - strandat 1630.322 kb on - strandat 1630.322 kb on - strandat 1630.367 kb on + strand, within QEN71_RS07340at 1630.368 kb on - strand, within QEN71_RS07340at 1630.368 kb on - strand, within QEN71_RS07340at 1630.368 kb on - strand, within QEN71_RS07340at 1630.368 kb on - strand, within QEN71_RS07340at 1630.378 kb on + strand, within QEN71_RS07340at 1630.378 kb on + strand, within QEN71_RS07340at 1630.378 kb on + strand, within QEN71_RS07340at 1630.378 kb on + strand, within QEN71_RS07340at 1630.378 kb on + strand, within QEN71_RS07340at 1630.379 kb on - strand, within QEN71_RS07340at 1630.379 kb on - strand, within QEN71_RS07340at 1630.379 kb on - strand, within QEN71_RS07340at 1630.379 kb on - strand, within QEN71_RS07340at 1630.379 kb on - strand, within QEN71_RS07340at 1630.379 kb on - strand, within QEN71_RS07340at 1630.379 kb on - strand, within QEN71_RS07340at 1630.379 kb on - strand, within QEN71_RS07340at 1630.441 kb on - strand, within QEN71_RS07340at 1630.441 kb on - strand, within QEN71_RS07340at 1630.598 kb on + strandat 1630.678 kb on + strandat 1630.678 kb on + strandat 1630.678 kb on + strandat 1630.678 kb on + strandat 1630.678 kb on + strandat 1630.678 kb on + strandat 1630.678 kb on + strandat 1630.679 kb on - strandat 1630.679 kb on - strandat 1630.679 kb on - strandat 1630.838 kb on - strand, within QEN71_RS07345at 1630.838 kb on - strand, within QEN71_RS07345at 1631.224 kb on + strand, within QEN71_RS07345at 1631.224 kb on + strand, within QEN71_RS07345at 1631.224 kb on + strand, within QEN71_RS07345at 1631.224 kb on + strand, within QEN71_RS07345at 1631.224 kb on + strand, within QEN71_RS07345at 1631.224 kb on + strand, within QEN71_RS07345at 1631.224 kb on + strand, within QEN71_RS07345at 1631.224 kb on + strand, within QEN71_RS07345at 1631.224 kb on + strand, within QEN71_RS07345at 1631.224 kb on + strand, within QEN71_RS07345at 1631.224 kb on + strand, within QEN71_RS07345at 1631.224 kb on + strand, within QEN71_RS07345at 1631.224 kb on + strand, within QEN71_RS07345at 1631.224 kb on + strand, within QEN71_RS07345at 1631.224 kb on + strand, within QEN71_RS07345at 1631.225 kb on - strand, within QEN71_RS07345at 1631.225 kb on - strand, within QEN71_RS07345at 1631.225 kb on - strand, within QEN71_RS07345at 1631.225 kb on - strand, within QEN71_RS07345at 1631.225 kb on - strand, within QEN71_RS07345at 1631.225 kb on - strand, within QEN71_RS07345at 1631.225 kb on - strand, within QEN71_RS07345at 1631.225 kb on - strand, within QEN71_RS07345at 1631.225 kb on - strand, within QEN71_RS07345at 1631.225 kb on - strand, within QEN71_RS07345at 1631.536 kb on + strand, within QEN71_RS07345at 1631.536 kb on + strand, within QEN71_RS07345at 1631.536 kb on + strand, within QEN71_RS07345at 1631.536 kb on + strand, within QEN71_RS07345at 1631.537 kb on - strand, within QEN71_RS07345at 1631.606 kb on + strand, within QEN71_RS07345at 1631.607 kb on - strand, within QEN71_RS07345at 1631.955 kb on + strand, within QEN71_RS07345at 1631.955 kb on + strand, within QEN71_RS07345at 1631.955 kb on + strand, within QEN71_RS07345at 1631.955 kb on + strand, within QEN71_RS07345at 1631.956 kb on - strand, within QEN71_RS07345at 1631.956 kb on - strand, within QEN71_RS07345at 1631.959 kb on + strand, within QEN71_RS07345at 1631.959 kb on + strand, within QEN71_RS07345at 1631.959 kb on + strand, within QEN71_RS07345at 1631.959 kb on + strand, within QEN71_RS07345at 1631.960 kb on - strand, within QEN71_RS07345at 1631.960 kb on - strand, within QEN71_RS07345at 1631.960 kb on - strand, within QEN71_RS07345at 1631.960 kb on - strand, within QEN71_RS07345at 1631.960 kb on - strand, within QEN71_RS07345at 1631.960 kb on - strand, within QEN71_RS07345at 1631.960 kb on - strand, within QEN71_RS07345at 1631.960 kb on - strand, within QEN71_RS07345at 1631.960 kb on - strand, within QEN71_RS07345at 1632.165 kb on + strandat 1632.165 kb on + strandat 1632.165 kb on + strandat 1632.165 kb on + strandat 1632.166 kb on - strandat 1632.166 kb on - strandat 1632.330 kb on + strand, within QEN71_RS07350at 1632.330 kb on + strand, within QEN71_RS07350at 1632.330 kb on + strand, within QEN71_RS07350at 1632.330 kb on + strand, within QEN71_RS07350at 1632.331 kb on - strand, within QEN71_RS07350at 1632.331 kb on - strand, within QEN71_RS07350at 1632.331 kb on - strand, within QEN71_RS07350at 1632.331 kb on - strand, within QEN71_RS07350at 1632.331 kb on - strand, within QEN71_RS07350at 1632.331 kb on - strand, within QEN71_RS07350at 1632.402 kb on + strand, within QEN71_RS07350at 1632.402 kb on + strand, within QEN71_RS07350at 1632.402 kb on + strand, within QEN71_RS07350at 1632.402 kb on + strand, within QEN71_RS07350at 1632.402 kb on + strand, within QEN71_RS07350at 1632.402 kb on + strand, within QEN71_RS07350at 1632.402 kb on + strand, within QEN71_RS07350at 1632.403 kb on - strand, within QEN71_RS07350at 1632.403 kb on - strand, within QEN71_RS07350at 1632.403 kb on - strand, within QEN71_RS07350at 1632.403 kb on - strand, within QEN71_RS07350at 1632.403 kb on - strand, within QEN71_RS07350at 1632.403 kb on - strand, within QEN71_RS07350at 1632.403 kb on - strand, within QEN71_RS07350at 1632.403 kb on - strand, within QEN71_RS07350at 1632.403 kb on - strand, within QEN71_RS07350at 1632.703 kb on - strand, within QEN71_RS07350at 1632.703 kb on - strand, within QEN71_RS07350at 1632.703 kb on - strand, within QEN71_RS07350at 1632.729 kb on + strand, within QEN71_RS07350at 1632.729 kb on + strand, within QEN71_RS07350at 1632.729 kb on + strand, within QEN71_RS07350at 1632.729 kb on + strand, within QEN71_RS07350at 1632.729 kb on + strand, within QEN71_RS07350at 1632.729 kb on + strand, within QEN71_RS07350at 1632.729 kb on + strand, within QEN71_RS07350at 1632.729 kb on + strand, within QEN71_RS07350at 1632.730 kb on - strand, within QEN71_RS07350at 1632.730 kb on - strand, within QEN71_RS07350at 1632.855 kb on + strand, within QEN71_RS07350at 1632.918 kb on + strand, within QEN71_RS07350at 1632.918 kb on + strand, within QEN71_RS07350at 1632.918 kb on + strand, within QEN71_RS07350at 1632.918 kb on + strand, within QEN71_RS07350at 1632.918 kb on + strand, within QEN71_RS07350at 1632.918 kb on + strand, within QEN71_RS07350at 1632.918 kb on + strand, within QEN71_RS07350at 1632.919 kb on - strand, within QEN71_RS07350at 1632.919 kb on - strand, within QEN71_RS07350at 1632.919 kb on - strand, within QEN71_RS07350at 1632.919 kb on - strand, within QEN71_RS07350at 1632.919 kb on - strand, within QEN71_RS07350

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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1,629,629 + QEN71_RS07335 0.34 +0.9
1,629,775 + QEN71_RS07335 0.49 -0.6
1,629,775 + QEN71_RS07335 0.49 +0.1
1,629,776 - QEN71_RS07335 0.49 +0.3
1,629,776 - QEN71_RS07335 0.49 -0.2
1,630,063 + QEN71_RS07335 0.79 +0.5
1,630,063 + QEN71_RS07335 0.79 +0.1
1,630,063 + QEN71_RS07335 0.79 -0.9
1,630,063 + QEN71_RS07335 0.79 +0.1
1,630,063 + QEN71_RS07335 0.79 +0.6
1,630,064 - QEN71_RS07335 0.79 -0.6
1,630,064 - QEN71_RS07335 0.79 -0.2
1,630,064 - QEN71_RS07335 0.79 -0.2
1,630,064 - QEN71_RS07335 0.79 +0.4
1,630,064 - QEN71_RS07335 0.79 -0.1
1,630,076 - QEN71_RS07335 0.81 +0.2
1,630,076 - QEN71_RS07335 0.81 -0.4
1,630,141 + QEN71_RS07335 0.87 +0.8
1,630,141 + QEN71_RS07335 0.87 +1.5
1,630,258 + +0.3
1,630,258 + -1.0
1,630,322 - +1.6
1,630,322 - -0.6
1,630,322 - -1.5
1,630,322 - +0.4
1,630,367 + QEN71_RS07340 0.12 -0.0
1,630,368 - QEN71_RS07340 0.13 -1.7
1,630,368 - QEN71_RS07340 0.13 -0.9
1,630,368 - QEN71_RS07340 0.13 -0.9
1,630,368 - QEN71_RS07340 0.13 +0.0
1,630,378 + QEN71_RS07340 0.18 -0.0
1,630,378 + QEN71_RS07340 0.18 -0.8
1,630,378 + QEN71_RS07340 0.18 -0.3
1,630,378 + QEN71_RS07340 0.18 +0.3
1,630,378 + QEN71_RS07340 0.18 +0.8
1,630,379 - QEN71_RS07340 0.18 -2.0
1,630,379 - QEN71_RS07340 0.18 -1.4
1,630,379 - QEN71_RS07340 0.18 -0.2
1,630,379 - QEN71_RS07340 0.18 -0.4
1,630,379 - QEN71_RS07340 0.18 -0.0
1,630,379 - QEN71_RS07340 0.18 -0.4
1,630,379 - QEN71_RS07340 0.18 +0.7
1,630,379 - QEN71_RS07340 0.18 +1.6
1,630,441 - QEN71_RS07340 0.49 +0.2
1,630,441 - QEN71_RS07340 0.49 +0.6
1,630,598 + -0.1
1,630,678 + +0.0
1,630,678 + +0.1
1,630,678 + -1.4
1,630,678 + -0.4
1,630,678 + -0.4
1,630,678 + -0.5
1,630,678 + +0.2
1,630,679 - -0.7
1,630,679 - -2.4
1,630,679 - -0.4
1,630,838 - QEN71_RS07345 0.15 -0.9
1,630,838 - QEN71_RS07345 0.15 -1.7
1,631,224 + QEN71_RS07345 0.39 +0.1
1,631,224 + QEN71_RS07345 0.39 +0.6
1,631,224 + QEN71_RS07345 0.39 -0.1
1,631,224 + QEN71_RS07345 0.39 +0.0
1,631,224 + QEN71_RS07345 0.39 +0.6
1,631,224 + QEN71_RS07345 0.39 +1.5
1,631,224 + QEN71_RS07345 0.39 -0.6
1,631,224 + QEN71_RS07345 0.39 -0.9
1,631,224 + QEN71_RS07345 0.39 +0.5
1,631,224 + QEN71_RS07345 0.39 +0.4
1,631,224 + QEN71_RS07345 0.39 -0.2
1,631,224 + QEN71_RS07345 0.39 -0.5
1,631,224 + QEN71_RS07345 0.39 +1.5
1,631,224 + QEN71_RS07345 0.39 -0.3
1,631,224 + QEN71_RS07345 0.39 +0.7
1,631,225 - QEN71_RS07345 0.39 +0.1
1,631,225 - QEN71_RS07345 0.39 -0.0
1,631,225 - QEN71_RS07345 0.39 -0.1
1,631,225 - QEN71_RS07345 0.39 +0.1
1,631,225 - QEN71_RS07345 0.39 -0.3
1,631,225 - QEN71_RS07345 0.39 -0.4
1,631,225 - QEN71_RS07345 0.39 -1.9
1,631,225 - QEN71_RS07345 0.39 -0.9
1,631,225 - QEN71_RS07345 0.39 +0.1
1,631,225 - QEN71_RS07345 0.39 -2.1
1,631,536 + QEN71_RS07345 0.59 -0.3
1,631,536 + QEN71_RS07345 0.59 -1.7
1,631,536 + QEN71_RS07345 0.59 -0.3
1,631,536 + QEN71_RS07345 0.59 -0.2
1,631,537 - QEN71_RS07345 0.59 -0.7
1,631,606 + QEN71_RS07345 0.63 +0.1
1,631,607 - QEN71_RS07345 0.63 -0.1
1,631,955 + QEN71_RS07345 0.85 +0.3
1,631,955 + QEN71_RS07345 0.85 +1.8
1,631,955 + QEN71_RS07345 0.85 +0.8
1,631,955 + QEN71_RS07345 0.85 +0.0
1,631,956 - QEN71_RS07345 0.85 -0.3
1,631,956 - QEN71_RS07345 0.85 +0.1
1,631,959 + QEN71_RS07345 0.85 -0.3
1,631,959 + QEN71_RS07345 0.85 +0.6
1,631,959 + QEN71_RS07345 0.85 +1.0
1,631,959 + QEN71_RS07345 0.85 -0.1
1,631,960 - QEN71_RS07345 0.85 +0.4
1,631,960 - QEN71_RS07345 0.85 -0.8
1,631,960 - QEN71_RS07345 0.85 -1.6
1,631,960 - QEN71_RS07345 0.85 -0.7
1,631,960 - QEN71_RS07345 0.85 -1.3
1,631,960 - QEN71_RS07345 0.85 -0.8
1,631,960 - QEN71_RS07345 0.85 -0.0
1,631,960 - QEN71_RS07345 0.85 +0.4
1,631,960 - QEN71_RS07345 0.85 -0.6
1,632,165 + +0.2
1,632,165 + +1.2
1,632,165 + -0.5
1,632,165 + +0.7
1,632,166 - -0.2
1,632,166 - +0.4
1,632,330 + QEN71_RS07350 0.13 -0.6
1,632,330 + QEN71_RS07350 0.13 +0.6
1,632,330 + QEN71_RS07350 0.13 -1.7
1,632,330 + QEN71_RS07350 0.13 +0.2
1,632,331 - QEN71_RS07350 0.13 -0.7
1,632,331 - QEN71_RS07350 0.13 -1.5
1,632,331 - QEN71_RS07350 0.13 -0.9
1,632,331 - QEN71_RS07350 0.13 -0.8
1,632,331 - QEN71_RS07350 0.13 +0.7
1,632,331 - QEN71_RS07350 0.13 -0.4
1,632,402 + QEN71_RS07350 0.19 +0.2
1,632,402 + QEN71_RS07350 0.19 +0.7
1,632,402 + QEN71_RS07350 0.19 -0.8
1,632,402 + QEN71_RS07350 0.19 -0.1
1,632,402 + QEN71_RS07350 0.19 +0.4
1,632,402 + QEN71_RS07350 0.19 +2.0
1,632,402 + QEN71_RS07350 0.19 -0.5
1,632,403 - QEN71_RS07350 0.20 +2.0
1,632,403 - QEN71_RS07350 0.20 +0.8
1,632,403 - QEN71_RS07350 0.20 +1.0
1,632,403 - QEN71_RS07350 0.20 -0.5
1,632,403 - QEN71_RS07350 0.20 -0.0
1,632,403 - QEN71_RS07350 0.20 -0.0
1,632,403 - QEN71_RS07350 0.20 -0.5
1,632,403 - QEN71_RS07350 0.20 +0.3
1,632,403 - QEN71_RS07350 0.20 -0.4
1,632,703 - QEN71_RS07350 0.48 +0.3
1,632,703 - QEN71_RS07350 0.48 +1.3
1,632,703 - QEN71_RS07350 0.48 +0.2
1,632,729 + QEN71_RS07350 0.51 -1.8
1,632,729 + QEN71_RS07350 0.51 +0.6
1,632,729 + QEN71_RS07350 0.51 +0.6
1,632,729 + QEN71_RS07350 0.51 -0.4
1,632,729 + QEN71_RS07350 0.51 +0.9
1,632,729 + QEN71_RS07350 0.51 +0.6
1,632,729 + QEN71_RS07350 0.51 -0.3
1,632,729 + QEN71_RS07350 0.51 +0.7
1,632,730 - QEN71_RS07350 0.51 +0.2
1,632,730 - QEN71_RS07350 0.51 -3.5
1,632,855 + QEN71_RS07350 0.63 +0.3
1,632,918 + QEN71_RS07350 0.69 -0.1
1,632,918 + QEN71_RS07350 0.69 +0.1
1,632,918 + QEN71_RS07350 0.69 +0.9
1,632,918 + QEN71_RS07350 0.69 -0.4
1,632,918 + QEN71_RS07350 0.69 -0.9
1,632,918 + QEN71_RS07350 0.69 +1.3
1,632,918 + QEN71_RS07350 0.69 +0.6
1,632,919 - QEN71_RS07350 0.69 -2.2
1,632,919 - QEN71_RS07350 0.69 -0.6
1,632,919 - QEN71_RS07350 0.69 +0.1
1,632,919 - QEN71_RS07350 0.69 +0.2
1,632,919 - QEN71_RS07350 0.69 -0.3

Or see this region's nucleotide sequence