Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS06150

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS06145 and QEN71_RS06150 are separated by 461 nucleotidesQEN71_RS06150 and QEN71_RS06155 are separated by 205 nucleotidesQEN71_RS06155 and QEN71_RS06160 are separated by 445 nucleotides QEN71_RS06145: QEN71_RS06145 - tRNA lysidine(34) synthetase TilS, at 1,365,381 to 1,366,799 _RS06145 QEN71_RS06150: QEN71_RS06150 - aspartate kinase, at 1,367,261 to 1,368,511 _RS06150 QEN71_RS06155: QEN71_RS06155 - tRNA-Ser, at 1,368,717 to 1,368,810 _RS06155 QEN71_RS06160: QEN71_RS06160 - hypothetical protein, at 1,369,256 to 1,369,618 _RS06160 Position (kb) 1367 1368 1369Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1366.937 kb on + strandat 1366.937 kb on + strandat 1366.937 kb on + strandat 1366.937 kb on + strandat 1366.937 kb on + strandat 1366.937 kb on + strandat 1366.937 kb on + strandat 1366.937 kb on + strandat 1366.937 kb on + strandat 1366.937 kb on + strandat 1366.994 kb on + strandat 1367.064 kb on + strandat 1367.117 kb on + strandat 1367.117 kb on + strandat 1368.007 kb on + strand, within QEN71_RS06150at 1368.484 kb on + strandat 1368.485 kb on - strandat 1368.485 kb on - strandat 1368.485 kb on - strandat 1368.485 kb on - strandat 1368.569 kb on - strandat 1368.892 kb on + strandat 1368.892 kb on + strandat 1368.892 kb on + strandat 1368.892 kb on + strandat 1368.892 kb on + strandat 1368.893 kb on - strandat 1368.893 kb on - strandat 1368.893 kb on - strandat 1368.965 kb on - strandat 1369.006 kb on + strandat 1369.022 kb on + strandat 1369.022 kb on + strandat 1369.022 kb on + strandat 1369.023 kb on - strandat 1369.023 kb on - strandat 1369.023 kb on - strandat 1369.023 kb on - strandat 1369.023 kb on - strandat 1369.023 kb on - strandat 1369.040 kb on + strandat 1369.093 kb on + strandat 1369.093 kb on + strandat 1369.093 kb on + strandat 1369.094 kb on - strandat 1369.115 kb on + strandat 1369.115 kb on + strandat 1369.126 kb on + strandat 1369.126 kb on + strandat 1369.126 kb on + strandat 1369.139 kb on - strandat 1369.151 kb on + strandat 1369.151 kb on + strandat 1369.151 kb on + strandat 1369.152 kb on - strandat 1369.163 kb on - strandat 1369.178 kb on + strandat 1369.178 kb on + strandat 1369.179 kb on - strandat 1369.200 kb on + strandat 1369.202 kb on + strandat 1369.202 kb on + strandat 1369.203 kb on - strandat 1369.203 kb on - strandat 1369.273 kb on + strandat 1369.273 kb on + strandat 1369.273 kb on + strandat 1369.373 kb on + strand, within QEN71_RS06160at 1369.373 kb on + strand, within QEN71_RS06160at 1369.373 kb on + strand, within QEN71_RS06160at 1369.373 kb on + strand, within QEN71_RS06160at 1369.374 kb on - strand, within QEN71_RS06160at 1369.374 kb on - strand, within QEN71_RS06160at 1369.394 kb on + strand, within QEN71_RS06160at 1369.394 kb on + strand, within QEN71_RS06160at 1369.394 kb on + strand, within QEN71_RS06160at 1369.394 kb on + strand, within QEN71_RS06160at 1369.394 kb on + strand, within QEN71_RS06160at 1369.394 kb on + strand, within QEN71_RS06160at 1369.394 kb on + strand, within QEN71_RS06160at 1369.394 kb on + strand, within QEN71_RS06160at 1369.394 kb on + strand, within QEN71_RS06160at 1369.394 kb on + strand, within QEN71_RS06160at 1369.395 kb on - strand, within QEN71_RS06160at 1369.395 kb on - strand, within QEN71_RS06160at 1369.395 kb on - strand, within QEN71_RS06160at 1369.395 kb on - strand, within QEN71_RS06160at 1369.395 kb on - strand, within QEN71_RS06160at 1369.395 kb on - strand, within QEN71_RS06160at 1369.395 kb on - strand, within QEN71_RS06160at 1369.430 kb on + strand, within QEN71_RS06160at 1369.431 kb on - strand, within QEN71_RS06160at 1369.491 kb on - strand, within QEN71_RS06160

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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1,366,937 + +0.1
1,366,937 + +2.4
1,366,937 + +0.8
1,366,937 + +0.5
1,366,937 + -1.4
1,366,937 + +1.0
1,366,937 + +0.0
1,366,937 + -0.3
1,366,937 + -0.0
1,366,937 + +0.2
1,366,994 + -1.0
1,367,064 + -1.3
1,367,117 + -0.4
1,367,117 + -1.4
1,368,007 + QEN71_RS06150 0.60 -2.0
1,368,484 + -0.4
1,368,485 - -0.9
1,368,485 - -3.7
1,368,485 - -1.8
1,368,485 - -2.2
1,368,569 - +0.4
1,368,892 + -0.6
1,368,892 + -1.8
1,368,892 + -0.5
1,368,892 + +0.8
1,368,892 + -1.7
1,368,893 - -1.2
1,368,893 - -0.5
1,368,893 - -0.5
1,368,965 - +0.4
1,369,006 + -0.8
1,369,022 + -0.7
1,369,022 + +0.5
1,369,022 + +0.6
1,369,023 - -0.0
1,369,023 - +0.4
1,369,023 - +0.8
1,369,023 - +0.2
1,369,023 - -1.0
1,369,023 - -0.6
1,369,040 + +0.2
1,369,093 + -0.1
1,369,093 + +0.1
1,369,093 + -0.2
1,369,094 - +0.0
1,369,115 + -2.0
1,369,115 + +0.3
1,369,126 + +0.2
1,369,126 + -1.3
1,369,126 + +1.5
1,369,139 - +0.7
1,369,151 + +0.4
1,369,151 + +1.0
1,369,151 + +1.5
1,369,152 - -1.2
1,369,163 - +0.6
1,369,178 + -1.5
1,369,178 + +0.6
1,369,179 - -0.3
1,369,200 + -2.9
1,369,202 + -0.2
1,369,202 + -1.0
1,369,203 - -0.0
1,369,203 - -0.4
1,369,273 + -1.4
1,369,273 + -1.0
1,369,273 + +0.4
1,369,373 + QEN71_RS06160 0.32 -0.2
1,369,373 + QEN71_RS06160 0.32 -0.3
1,369,373 + QEN71_RS06160 0.32 -0.8
1,369,373 + QEN71_RS06160 0.32 -1.0
1,369,374 - QEN71_RS06160 0.33 -0.4
1,369,374 - QEN71_RS06160 0.33 +0.0
1,369,394 + QEN71_RS06160 0.38 +0.5
1,369,394 + QEN71_RS06160 0.38 -1.8
1,369,394 + QEN71_RS06160 0.38 -0.1
1,369,394 + QEN71_RS06160 0.38 -0.3
1,369,394 + QEN71_RS06160 0.38 +0.2
1,369,394 + QEN71_RS06160 0.38 +1.1
1,369,394 + QEN71_RS06160 0.38 +0.0
1,369,394 + QEN71_RS06160 0.38 +0.4
1,369,394 + QEN71_RS06160 0.38 -0.3
1,369,394 + QEN71_RS06160 0.38 +0.0
1,369,395 - QEN71_RS06160 0.38 -1.9
1,369,395 - QEN71_RS06160 0.38 -0.6
1,369,395 - QEN71_RS06160 0.38 -0.6
1,369,395 - QEN71_RS06160 0.38 -0.1
1,369,395 - QEN71_RS06160 0.38 +0.3
1,369,395 - QEN71_RS06160 0.38 -1.0
1,369,395 - QEN71_RS06160 0.38 +0.1
1,369,430 + QEN71_RS06160 0.48 +0.5
1,369,431 - QEN71_RS06160 0.48 +0.3
1,369,491 - QEN71_RS06160 0.65 +1.1

Or see this region's nucleotide sequence