Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS05780

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS05770 and QEN71_RS05775 are separated by 103 nucleotidesQEN71_RS05775 and QEN71_RS05780 are separated by 110 nucleotidesQEN71_RS05780 and QEN71_RS05785 are separated by 69 nucleotides QEN71_RS05770: QEN71_RS05770 - hypothetical protein, at 1,282,577 to 1,282,813 _RS05770 QEN71_RS05775: QEN71_RS05775 - low molecular weight protein-tyrosine-phosphatase, at 1,282,917 to 1,283,444 _RS05775 QEN71_RS05780: QEN71_RS05780 - Fe-S cluster assembly transcriptional regulator IscR, at 1,283,555 to 1,284,079 _RS05780 QEN71_RS05785: QEN71_RS05785 - IscS subfamily cysteine desulfurase, at 1,284,149 to 1,285,372 _RS05785 Position (kb) 1283 1284 1285Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1282.591 kb on - strandat 1282.598 kb on + strandat 1282.598 kb on + strandat 1282.598 kb on + strandat 1282.598 kb on + strandat 1282.598 kb on + strandat 1282.598 kb on + strandat 1282.598 kb on + strandat 1282.598 kb on + strandat 1282.599 kb on - strandat 1282.599 kb on - strandat 1282.599 kb on - strandat 1282.599 kb on - strandat 1282.599 kb on - strandat 1282.599 kb on - strandat 1282.640 kb on + strand, within QEN71_RS05770at 1282.640 kb on + strand, within QEN71_RS05770at 1282.640 kb on + strand, within QEN71_RS05770at 1282.640 kb on + strand, within QEN71_RS05770at 1282.641 kb on - strand, within QEN71_RS05770at 1282.641 kb on - strand, within QEN71_RS05770at 1282.641 kb on - strand, within QEN71_RS05770at 1282.641 kb on - strand, within QEN71_RS05770at 1282.652 kb on + strand, within QEN71_RS05770at 1282.652 kb on + strand, within QEN71_RS05770at 1282.652 kb on + strand, within QEN71_RS05770at 1282.652 kb on + strand, within QEN71_RS05770at 1282.652 kb on + strand, within QEN71_RS05770at 1282.653 kb on - strand, within QEN71_RS05770at 1282.653 kb on - strand, within QEN71_RS05770at 1282.653 kb on - strand, within QEN71_RS05770at 1282.653 kb on - strand, within QEN71_RS05770at 1282.653 kb on - strand, within QEN71_RS05770at 1282.653 kb on - strand, within QEN71_RS05770at 1282.653 kb on - strand, within QEN71_RS05770at 1282.653 kb on - strand, within QEN71_RS05770at 1282.733 kb on + strand, within QEN71_RS05770at 1282.734 kb on - strand, within QEN71_RS05770at 1282.734 kb on - strand, within QEN71_RS05770at 1282.811 kb on + strandat 1282.811 kb on + strandat 1282.811 kb on + strandat 1282.812 kb on - strandat 1282.812 kb on - strandat 1282.812 kb on - strandat 1282.812 kb on - strandat 1282.812 kb on - strandat 1282.812 kb on - strandat 1282.812 kb on - strandat 1282.858 kb on + strandat 1282.858 kb on + strandat 1282.858 kb on + strandat 1282.858 kb on + strandat 1282.859 kb on - strandat 1282.859 kb on - strandat 1282.859 kb on - strandat 1282.859 kb on - strandat 1282.859 kb on - strandat 1282.859 kb on - strandat 1282.859 kb on - strandat 1282.859 kb on - strandat 1282.859 kb on - strandat 1282.859 kb on - strandat 1282.859 kb on - strandat 1282.860 kb on + strandat 1282.861 kb on - strandat 1282.861 kb on - strandat 1282.861 kb on - strandat 1282.861 kb on - strandat 1282.884 kb on + strandat 1282.884 kb on + strandat 1282.884 kb on + strandat 1282.884 kb on + strandat 1282.884 kb on + strandat 1282.884 kb on + strandat 1282.884 kb on + strandat 1282.884 kb on + strandat 1282.884 kb on + strandat 1282.884 kb on + strandat 1282.884 kb on + strandat 1282.884 kb on + strandat 1282.884 kb on + strandat 1282.884 kb on + strandat 1282.884 kb on + strandat 1282.884 kb on + strandat 1282.885 kb on - strandat 1282.885 kb on - strandat 1282.885 kb on - strandat 1282.885 kb on - strandat 1282.885 kb on - strandat 1282.885 kb on - strandat 1282.885 kb on - strandat 1283.112 kb on + strand, within QEN71_RS05775at 1283.125 kb on + strand, within QEN71_RS05775at 1283.125 kb on + strand, within QEN71_RS05775at 1283.125 kb on + strand, within QEN71_RS05775at 1283.125 kb on + strand, within QEN71_RS05775at 1283.126 kb on - strand, within QEN71_RS05775at 1283.126 kb on - strand, within QEN71_RS05775at 1283.346 kb on + strand, within QEN71_RS05775at 1283.346 kb on + strand, within QEN71_RS05775at 1283.346 kb on + strand, within QEN71_RS05775at 1283.346 kb on + strand, within QEN71_RS05775at 1283.346 kb on + strand, within QEN71_RS05775at 1283.346 kb on + strand, within QEN71_RS05775at 1283.347 kb on - strand, within QEN71_RS05775at 1283.347 kb on - strand, within QEN71_RS05775at 1283.347 kb on - strand, within QEN71_RS05775at 1283.442 kb on + strandat 1283.442 kb on + strandat 1283.442 kb on + strandat 1283.443 kb on - strandat 1283.443 kb on - strandat 1283.443 kb on - strandat 1283.443 kb on - strandat 1283.443 kb on - strandat 1283.443 kb on - strandat 1283.458 kb on + strandat 1283.459 kb on - strandat 1283.462 kb on + strandat 1283.462 kb on + strandat 1283.462 kb on + strandat 1283.462 kb on + strandat 1283.462 kb on + strandat 1283.462 kb on + strandat 1283.462 kb on + strandat 1283.463 kb on - strandat 1283.463 kb on - strandat 1283.463 kb on - strandat 1283.463 kb on - strandat 1283.463 kb on - strandat 1283.482 kb on - strandat 1283.487 kb on + strandat 1283.488 kb on - strandat 1283.512 kb on + strandat 1283.512 kb on + strandat 1283.512 kb on + strandat 1283.513 kb on - strandat 1283.513 kb on - strandat 1283.514 kb on + strandat 1283.554 kb on + strandat 1283.554 kb on + strandat 1283.554 kb on + strandat 1283.554 kb on + strandat 1283.554 kb on + strandat 1283.554 kb on + strandat 1283.554 kb on + strandat 1283.554 kb on + strandat 1283.554 kb on + strandat 1283.554 kb on + strandat 1283.554 kb on + strandat 1283.554 kb on + strandat 1283.554 kb on + strandat 1283.554 kb on + strandat 1283.554 kb on + strandat 1283.554 kb on + strandat 1283.554 kb on + strandat 1283.554 kb on + strandat 1283.554 kb on + strandat 1283.554 kb on + strandat 1283.554 kb on + strandat 1283.554 kb on + strandat 1283.554 kb on + strandat 1283.554 kb on + strandat 1283.554 kb on + strandat 1283.554 kb on + strandat 1283.554 kb on + strandat 1283.554 kb on + strandat 1283.554 kb on + strandat 1283.554 kb on + strandat 1283.554 kb on + strandat 1283.554 kb on + strandat 1283.554 kb on + strandat 1283.554 kb on + strandat 1283.554 kb on + strandat 1283.747 kb on + strand, within QEN71_RS05780at 1283.747 kb on + strand, within QEN71_RS05780at 1284.121 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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1,282,591 - +0.3
1,282,598 + -1.3
1,282,598 + +0.2
1,282,598 + +0.6
1,282,598 + -0.5
1,282,598 + -0.0
1,282,598 + +0.5
1,282,598 + -0.4
1,282,598 + +0.3
1,282,599 - -0.0
1,282,599 - -1.0
1,282,599 - -0.4
1,282,599 - +0.0
1,282,599 - -0.9
1,282,599 - -0.2
1,282,640 + QEN71_RS05770 0.27 +1.4
1,282,640 + QEN71_RS05770 0.27 +2.0
1,282,640 + QEN71_RS05770 0.27 -0.0
1,282,640 + QEN71_RS05770 0.27 -1.1
1,282,641 - QEN71_RS05770 0.27 +0.7
1,282,641 - QEN71_RS05770 0.27 -0.0
1,282,641 - QEN71_RS05770 0.27 -0.0
1,282,641 - QEN71_RS05770 0.27 -0.2
1,282,652 + QEN71_RS05770 0.32 -0.2
1,282,652 + QEN71_RS05770 0.32 +1.5
1,282,652 + QEN71_RS05770 0.32 -0.0
1,282,652 + QEN71_RS05770 0.32 -2.1
1,282,652 + QEN71_RS05770 0.32 -0.5
1,282,653 - QEN71_RS05770 0.32 -0.4
1,282,653 - QEN71_RS05770 0.32 -0.6
1,282,653 - QEN71_RS05770 0.32 +0.9
1,282,653 - QEN71_RS05770 0.32 -0.2
1,282,653 - QEN71_RS05770 0.32 +0.6
1,282,653 - QEN71_RS05770 0.32 +1.7
1,282,653 - QEN71_RS05770 0.32 +0.0
1,282,653 - QEN71_RS05770 0.32 -0.8
1,282,733 + QEN71_RS05770 0.66 -1.1
1,282,734 - QEN71_RS05770 0.66 -0.0
1,282,734 - QEN71_RS05770 0.66 -0.1
1,282,811 + -0.2
1,282,811 + -1.2
1,282,811 + +0.5
1,282,812 - -0.4
1,282,812 - +0.5
1,282,812 - -0.5
1,282,812 - -1.4
1,282,812 - +1.1
1,282,812 - -0.5
1,282,812 - -0.5
1,282,858 + +0.8
1,282,858 + -0.0
1,282,858 + -0.9
1,282,858 + +0.7
1,282,859 - +0.8
1,282,859 - -0.2
1,282,859 - +0.1
1,282,859 - -0.4
1,282,859 - +1.1
1,282,859 - -0.4
1,282,859 - -0.2
1,282,859 - -0.2
1,282,859 - -0.7
1,282,859 - +0.2
1,282,859 - -0.3
1,282,860 + -1.7
1,282,861 - +1.2
1,282,861 - -0.6
1,282,861 - -0.5
1,282,861 - +0.4
1,282,884 + +0.3
1,282,884 + -0.4
1,282,884 + -0.3
1,282,884 + -0.9
1,282,884 + -0.6
1,282,884 + -0.0
1,282,884 + -0.3
1,282,884 + +1.0
1,282,884 + +2.1
1,282,884 + -2.4
1,282,884 + -0.1
1,282,884 + +0.2
1,282,884 + -0.5
1,282,884 + +0.8
1,282,884 + +0.6
1,282,884 + +0.4
1,282,885 - -2.5
1,282,885 - -0.4
1,282,885 - +0.1
1,282,885 - +0.5
1,282,885 - -0.2
1,282,885 - +1.5
1,282,885 - +0.4
1,283,112 + QEN71_RS05775 0.37 +1.0
1,283,125 + QEN71_RS05775 0.39 -0.6
1,283,125 + QEN71_RS05775 0.39 +0.7
1,283,125 + QEN71_RS05775 0.39 -1.2
1,283,125 + QEN71_RS05775 0.39 +0.2
1,283,126 - QEN71_RS05775 0.40 -0.4
1,283,126 - QEN71_RS05775 0.40 +0.1
1,283,346 + QEN71_RS05775 0.81 -1.6
1,283,346 + QEN71_RS05775 0.81 +2.6
1,283,346 + QEN71_RS05775 0.81 +0.6
1,283,346 + QEN71_RS05775 0.81 -0.4
1,283,346 + QEN71_RS05775 0.81 -0.2
1,283,346 + QEN71_RS05775 0.81 -1.4
1,283,347 - QEN71_RS05775 0.81 -1.3
1,283,347 - QEN71_RS05775 0.81 +0.4
1,283,347 - QEN71_RS05775 0.81 -0.5
1,283,442 + +0.2
1,283,442 + -1.5
1,283,442 + -0.6
1,283,443 - -0.0
1,283,443 - -0.6
1,283,443 - +0.3
1,283,443 - -0.8
1,283,443 - +0.2
1,283,443 - -0.5
1,283,458 + -1.0
1,283,459 - +0.7
1,283,462 + -0.6
1,283,462 + +2.2
1,283,462 + -0.3
1,283,462 + -0.8
1,283,462 + -1.1
1,283,462 + -2.7
1,283,462 + -0.7
1,283,463 - -0.6
1,283,463 - +1.1
1,283,463 - +0.6
1,283,463 - -0.8
1,283,463 - +0.1
1,283,482 - -1.2
1,283,487 + +0.6
1,283,488 - -0.2
1,283,512 + +0.5
1,283,512 + -0.0
1,283,512 + -0.3
1,283,513 - -1.4
1,283,513 - +1.5
1,283,514 + -0.4
1,283,554 + +0.2
1,283,554 + -0.3
1,283,554 + -0.7
1,283,554 + -0.9
1,283,554 + +0.7
1,283,554 + -0.2
1,283,554 + +0.6
1,283,554 + -1.0
1,283,554 + -0.7
1,283,554 + -0.4
1,283,554 + +0.1
1,283,554 + +0.5
1,283,554 + -0.2
1,283,554 + +0.1
1,283,554 + -1.6
1,283,554 + +0.2
1,283,554 + +1.0
1,283,554 + -0.4
1,283,554 + +0.9
1,283,554 + -0.4
1,283,554 + -1.8
1,283,554 + -1.2
1,283,554 + +0.1
1,283,554 + -0.0
1,283,554 + +0.5
1,283,554 + -0.7
1,283,554 + +0.8
1,283,554 + -0.4
1,283,554 + -0.0
1,283,554 + -0.0
1,283,554 + -0.0
1,283,554 + +0.5
1,283,554 + +1.3
1,283,554 + -0.2
1,283,554 + -1.4
1,283,747 + QEN71_RS05780 0.37 -3.2
1,283,747 + QEN71_RS05780 0.37 -1.6
1,284,121 + +0.4

Or see this region's nucleotide sequence