Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS03220

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS03210 and QEN71_RS03215 are separated by 79 nucleotidesQEN71_RS03215 and QEN71_RS03220 are separated by 83 nucleotidesQEN71_RS03220 and QEN71_RS03225 are separated by 190 nucleotidesQEN71_RS03225 and QEN71_RS03230 are separated by 98 nucleotides QEN71_RS03210: QEN71_RS03210 - DUF1439 domain-containing protein, at 715,517 to 716,110 _RS03210 QEN71_RS03215: QEN71_RS03215 - undecaprenyl-diphosphate phosphatase, at 716,190 to 717,026 _RS03215 QEN71_RS03220: QEN71_RS03220 - tRNA (guanosine(46)-N7)-methyltransferase TrmB, at 717,110 to 717,889 _RS03220 QEN71_RS03225: QEN71_RS03225 - tRNA-Gly, at 718,080 to 718,153 _RS03225 QEN71_RS03230: QEN71_RS03230 - YggT family protein, at 718,252 to 718,815 _RS03230 Position (kb) 717 718Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 716.997 kb on + strandat 716.997 kb on + strandat 716.997 kb on + strandat 716.998 kb on - strandat 717.097 kb on - strandat 717.116 kb on - strandat 717.116 kb on - strandat 717.116 kb on - strandat 717.132 kb on + strandat 717.132 kb on + strandat 717.132 kb on + strandat 717.132 kb on + strandat 717.133 kb on - strandat 717.133 kb on - strandat 717.133 kb on - strandat 717.133 kb on - strandat 717.198 kb on + strand, within QEN71_RS03220at 717.199 kb on - strand, within QEN71_RS03220at 717.216 kb on + strand, within QEN71_RS03220at 717.279 kb on + strand, within QEN71_RS03220at 717.279 kb on + strand, within QEN71_RS03220at 717.279 kb on + strand, within QEN71_RS03220at 717.280 kb on - strand, within QEN71_RS03220at 717.280 kb on - strand, within QEN71_RS03220at 717.280 kb on - strand, within QEN71_RS03220at 717.280 kb on - strand, within QEN71_RS03220at 717.309 kb on + strand, within QEN71_RS03220at 717.309 kb on + strand, within QEN71_RS03220at 717.309 kb on + strand, within QEN71_RS03220at 717.309 kb on + strand, within QEN71_RS03220at 717.309 kb on + strand, within QEN71_RS03220at 717.309 kb on + strand, within QEN71_RS03220at 717.309 kb on + strand, within QEN71_RS03220at 717.309 kb on + strand, within QEN71_RS03220at 717.310 kb on - strand, within QEN71_RS03220at 717.310 kb on - strand, within QEN71_RS03220at 717.310 kb on - strand, within QEN71_RS03220at 717.412 kb on + strand, within QEN71_RS03220at 717.412 kb on + strand, within QEN71_RS03220at 717.412 kb on + strand, within QEN71_RS03220at 717.412 kb on + strand, within QEN71_RS03220at 717.412 kb on + strand, within QEN71_RS03220at 717.412 kb on + strand, within QEN71_RS03220at 717.412 kb on + strand, within QEN71_RS03220at 717.413 kb on - strand, within QEN71_RS03220at 717.413 kb on - strand, within QEN71_RS03220at 717.413 kb on - strand, within QEN71_RS03220at 717.413 kb on - strand, within QEN71_RS03220at 717.455 kb on + strand, within QEN71_RS03220at 717.456 kb on - strand, within QEN71_RS03220at 717.684 kb on + strand, within QEN71_RS03220at 717.685 kb on - strand, within QEN71_RS03220at 717.696 kb on + strand, within QEN71_RS03220at 717.696 kb on + strand, within QEN71_RS03220at 717.697 kb on - strand, within QEN71_RS03220at 717.697 kb on - strand, within QEN71_RS03220at 717.974 kb on + strandat 717.974 kb on + strandat 717.974 kb on + strandat 717.975 kb on - strandat 717.975 kb on - strandat 717.975 kb on - strandat 717.976 kb on + strandat 717.977 kb on - strandat 717.977 kb on - strandat 717.977 kb on - strandat 717.988 kb on - strandat 717.988 kb on - strandat 718.046 kb on - strandat 718.046 kb on - strandat 718.113 kb on + strand, within QEN71_RS03225at 718.113 kb on + strand, within QEN71_RS03225at 718.113 kb on + strand, within QEN71_RS03225at 718.114 kb on - strand, within QEN71_RS03225at 718.114 kb on - strand, within QEN71_RS03225at 718.114 kb on - strand, within QEN71_RS03225at 718.114 kb on - strand, within QEN71_RS03225at 718.126 kb on + strand, within QEN71_RS03225at 718.126 kb on + strand, within QEN71_RS03225at 718.126 kb on + strand, within QEN71_RS03225at 718.127 kb on - strand, within QEN71_RS03225at 718.127 kb on - strand, within QEN71_RS03225at 718.127 kb on - strand, within QEN71_RS03225at 718.131 kb on + strand, within QEN71_RS03225at 718.131 kb on + strand, within QEN71_RS03225at 718.131 kb on + strand, within QEN71_RS03225at 718.131 kb on + strand, within QEN71_RS03225at 718.131 kb on + strand, within QEN71_RS03225at 718.132 kb on - strand, within QEN71_RS03225at 718.132 kb on - strand, within QEN71_RS03225at 718.132 kb on - strand, within QEN71_RS03225at 718.132 kb on - strand, within QEN71_RS03225at 718.132 kb on - strand, within QEN71_RS03225at 718.134 kb on + strand, within QEN71_RS03225at 718.134 kb on + strand, within QEN71_RS03225at 718.134 kb on + strand, within QEN71_RS03225at 718.134 kb on + strand, within QEN71_RS03225at 718.134 kb on + strand, within QEN71_RS03225at 718.134 kb on + strand, within QEN71_RS03225at 718.134 kb on + strand, within QEN71_RS03225at 718.134 kb on + strand, within QEN71_RS03225at 718.135 kb on - strand, within QEN71_RS03225at 718.135 kb on - strand, within QEN71_RS03225at 718.135 kb on - strand, within QEN71_RS03225at 718.135 kb on - strand, within QEN71_RS03225at 718.135 kb on - strand, within QEN71_RS03225at 718.135 kb on - strand, within QEN71_RS03225at 718.135 kb on - strand, within QEN71_RS03225at 718.140 kb on + strand, within QEN71_RS03225at 718.141 kb on - strand, within QEN71_RS03225at 718.141 kb on - strand, within QEN71_RS03225at 718.142 kb on + strand, within QEN71_RS03225at 718.142 kb on + strand, within QEN71_RS03225at 718.142 kb on + strand, within QEN71_RS03225at 718.142 kb on + strand, within QEN71_RS03225at 718.142 kb on + strand, within QEN71_RS03225at 718.142 kb on + strand, within QEN71_RS03225at 718.142 kb on + strand, within QEN71_RS03225at 718.142 kb on + strand, within QEN71_RS03225at 718.142 kb on + strand, within QEN71_RS03225at 718.142 kb on + strand, within QEN71_RS03225at 718.142 kb on + strand, within QEN71_RS03225at 718.143 kb on - strand, within QEN71_RS03225at 718.143 kb on - strand, within QEN71_RS03225at 718.143 kb on - strand, within QEN71_RS03225at 718.143 kb on - strand, within QEN71_RS03225at 718.143 kb on - strand, within QEN71_RS03225at 718.143 kb on - strand, within QEN71_RS03225at 718.143 kb on - strand, within QEN71_RS03225at 718.143 kb on - strand, within QEN71_RS03225at 718.143 kb on - strand, within QEN71_RS03225at 718.250 kb on + strandat 718.250 kb on + strandat 718.250 kb on + strandat 718.250 kb on + strandat 718.251 kb on - strandat 718.406 kb on + strand, within QEN71_RS03230at 718.406 kb on + strand, within QEN71_RS03230at 718.583 kb on + strand, within QEN71_RS03230at 718.583 kb on + strand, within QEN71_RS03230at 718.583 kb on + strand, within QEN71_RS03230at 718.583 kb on + strand, within QEN71_RS03230at 718.583 kb on + strand, within QEN71_RS03230at 718.583 kb on + strand, within QEN71_RS03230at 718.583 kb on + strand, within QEN71_RS03230at 718.584 kb on - strand, within QEN71_RS03230at 718.584 kb on - strand, within QEN71_RS03230at 718.584 kb on - strand, within QEN71_RS03230at 718.584 kb on - strand, within QEN71_RS03230at 718.584 kb on - strand, within QEN71_RS03230at 718.639 kb on - strand, within QEN71_RS03230at 718.712 kb on + strand, within QEN71_RS03230at 718.712 kb on + strand, within QEN71_RS03230at 718.712 kb on + strand, within QEN71_RS03230at 718.712 kb on + strand, within QEN71_RS03230at 718.712 kb on + strand, within QEN71_RS03230at 718.713 kb on - strand, within QEN71_RS03230at 718.713 kb on - strand, within QEN71_RS03230at 718.713 kb on - strand, within QEN71_RS03230at 718.713 kb on - strand, within QEN71_RS03230at 718.782 kb on + strandat 718.782 kb on + strandat 718.782 kb on + strandat 718.782 kb on + strandat 718.783 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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716,997 + -0.4
716,997 + -1.3
716,997 + +0.8
716,998 - +1.0
717,097 - -0.5
717,116 - +1.2
717,116 - +0.6
717,116 - -1.3
717,132 + -2.4
717,132 + -1.7
717,132 + +0.0
717,132 + -0.7
717,133 - -1.2
717,133 - +0.2
717,133 - +0.0
717,133 - -1.4
717,198 + QEN71_RS03220 0.11 -1.5
717,199 - QEN71_RS03220 0.11 +0.4
717,216 + QEN71_RS03220 0.14 -1.4
717,279 + QEN71_RS03220 0.22 -1.6
717,279 + QEN71_RS03220 0.22 -1.9
717,279 + QEN71_RS03220 0.22 -0.8
717,280 - QEN71_RS03220 0.22 -1.5
717,280 - QEN71_RS03220 0.22 -1.0
717,280 - QEN71_RS03220 0.22 +0.9
717,280 - QEN71_RS03220 0.22 -1.0
717,309 + QEN71_RS03220 0.26 -1.3
717,309 + QEN71_RS03220 0.26 -2.5
717,309 + QEN71_RS03220 0.26 -2.6
717,309 + QEN71_RS03220 0.26 +0.0
717,309 + QEN71_RS03220 0.26 -1.6
717,309 + QEN71_RS03220 0.26 -1.4
717,309 + QEN71_RS03220 0.26 -1.0
717,309 + QEN71_RS03220 0.26 -0.7
717,310 - QEN71_RS03220 0.26 +0.7
717,310 - QEN71_RS03220 0.26 -0.9
717,310 - QEN71_RS03220 0.26 -2.4
717,412 + QEN71_RS03220 0.39 -0.3
717,412 + QEN71_RS03220 0.39 -1.9
717,412 + QEN71_RS03220 0.39 -2.4
717,412 + QEN71_RS03220 0.39 -2.1
717,412 + QEN71_RS03220 0.39 -2.3
717,412 + QEN71_RS03220 0.39 +0.1
717,412 + QEN71_RS03220 0.39 -2.1
717,413 - QEN71_RS03220 0.39 +0.0
717,413 - QEN71_RS03220 0.39 +0.3
717,413 - QEN71_RS03220 0.39 -3.5
717,413 - QEN71_RS03220 0.39 -2.3
717,455 + QEN71_RS03220 0.44 -1.6
717,456 - QEN71_RS03220 0.44 -1.7
717,684 + QEN71_RS03220 0.74 -1.1
717,685 - QEN71_RS03220 0.74 -1.0
717,696 + QEN71_RS03220 0.75 +0.1
717,696 + QEN71_RS03220 0.75 -0.9
717,697 - QEN71_RS03220 0.75 -1.8
717,697 - QEN71_RS03220 0.75 +0.7
717,974 + +1.6
717,974 + -0.6
717,974 + -1.6
717,975 - -0.1
717,975 - -0.5
717,975 - -0.2
717,976 + +0.0
717,977 - +0.0
717,977 - -1.6
717,977 - +0.8
717,988 - +0.4
717,988 - -0.8
718,046 - -0.5
718,046 - -0.3
718,113 + QEN71_RS03225 0.45 -2.9
718,113 + QEN71_RS03225 0.45 -0.2
718,113 + QEN71_RS03225 0.45 -1.1
718,114 - QEN71_RS03225 0.46 +0.0
718,114 - QEN71_RS03225 0.46 -0.6
718,114 - QEN71_RS03225 0.46 +2.0
718,114 - QEN71_RS03225 0.46 -1.7
718,126 + QEN71_RS03225 0.62 -0.3
718,126 + QEN71_RS03225 0.62 -2.1
718,126 + QEN71_RS03225 0.62 -2.3
718,127 - QEN71_RS03225 0.64 +0.8
718,127 - QEN71_RS03225 0.64 -0.5
718,127 - QEN71_RS03225 0.64 +0.0
718,131 + QEN71_RS03225 0.69 -0.6
718,131 + QEN71_RS03225 0.69 -1.3
718,131 + QEN71_RS03225 0.69 -0.7
718,131 + QEN71_RS03225 0.69 -1.9
718,131 + QEN71_RS03225 0.69 -1.4
718,132 - QEN71_RS03225 0.70 -1.2
718,132 - QEN71_RS03225 0.70 -0.4
718,132 - QEN71_RS03225 0.70 -1.1
718,132 - QEN71_RS03225 0.70 +0.0
718,132 - QEN71_RS03225 0.70 -0.2
718,134 + QEN71_RS03225 0.73 -3.0
718,134 + QEN71_RS03225 0.73 -1.2
718,134 + QEN71_RS03225 0.73 +0.0
718,134 + QEN71_RS03225 0.73 -0.2
718,134 + QEN71_RS03225 0.73 -1.7
718,134 + QEN71_RS03225 0.73 +0.0
718,134 + QEN71_RS03225 0.73 -1.2
718,134 + QEN71_RS03225 0.73 -1.2
718,135 - QEN71_RS03225 0.74 +1.0
718,135 - QEN71_RS03225 0.74 +0.1
718,135 - QEN71_RS03225 0.74 +0.0
718,135 - QEN71_RS03225 0.74 +0.4
718,135 - QEN71_RS03225 0.74 -1.9
718,135 - QEN71_RS03225 0.74 +0.1
718,135 - QEN71_RS03225 0.74 +2.3
718,140 + QEN71_RS03225 0.81 +1.7
718,141 - QEN71_RS03225 0.82 +0.3
718,141 - QEN71_RS03225 0.82 -0.5
718,142 + QEN71_RS03225 0.84 -0.5
718,142 + QEN71_RS03225 0.84 -0.2
718,142 + QEN71_RS03225 0.84 +1.3
718,142 + QEN71_RS03225 0.84 +0.9
718,142 + QEN71_RS03225 0.84 -0.2
718,142 + QEN71_RS03225 0.84 -1.2
718,142 + QEN71_RS03225 0.84 -0.7
718,142 + QEN71_RS03225 0.84 +0.0
718,142 + QEN71_RS03225 0.84 +0.8
718,142 + QEN71_RS03225 0.84 -0.4
718,142 + QEN71_RS03225 0.84 +0.1
718,143 - QEN71_RS03225 0.85 +0.1
718,143 - QEN71_RS03225 0.85 -0.3
718,143 - QEN71_RS03225 0.85 +0.0
718,143 - QEN71_RS03225 0.85 -0.1
718,143 - QEN71_RS03225 0.85 -1.6
718,143 - QEN71_RS03225 0.85 -0.8
718,143 - QEN71_RS03225 0.85 -0.7
718,143 - QEN71_RS03225 0.85 +0.8
718,143 - QEN71_RS03225 0.85 -0.7
718,250 + -1.0
718,250 + -0.5
718,250 + -2.1
718,250 + +0.2
718,251 - +0.0
718,406 + QEN71_RS03230 0.27 -1.0
718,406 + QEN71_RS03230 0.27 -0.7
718,583 + QEN71_RS03230 0.59 -2.1
718,583 + QEN71_RS03230 0.59 +1.0
718,583 + QEN71_RS03230 0.59 -0.9
718,583 + QEN71_RS03230 0.59 -1.1
718,583 + QEN71_RS03230 0.59 -1.2
718,583 + QEN71_RS03230 0.59 -0.0
718,583 + QEN71_RS03230 0.59 +0.6
718,584 - QEN71_RS03230 0.59 -1.2
718,584 - QEN71_RS03230 0.59 -0.5
718,584 - QEN71_RS03230 0.59 +2.0
718,584 - QEN71_RS03230 0.59 -1.0
718,584 - QEN71_RS03230 0.59 +1.0
718,639 - QEN71_RS03230 0.69 -1.4
718,712 + QEN71_RS03230 0.82 -1.2
718,712 + QEN71_RS03230 0.82 -1.0
718,712 + QEN71_RS03230 0.82 -1.6
718,712 + QEN71_RS03230 0.82 +0.5
718,712 + QEN71_RS03230 0.82 +0.8
718,713 - QEN71_RS03230 0.82 -0.3
718,713 - QEN71_RS03230 0.82 -1.3
718,713 - QEN71_RS03230 0.82 -1.5
718,713 - QEN71_RS03230 0.82 -0.8
718,782 + -0.5
718,782 + -0.8
718,782 + -0.3
718,782 + +0.6
718,783 - -0.9

Or see this region's nucleotide sequence