Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS03070 and QEN71_RS03075 are separated by 233 nucleotides QEN71_RS03075 and QEN71_RS03080 are separated by 10 nucleotides QEN71_RS03080 and QEN71_RS03085 are separated by 257 nucleotides QEN71_RS03085 and QEN71_RS03090 are separated by 189 nucleotides QEN71_RS03090 and QEN71_RS03095 are separated by 2 nucleotides
QEN71_RS03070: QEN71_RS03070 - L-aspartate oxidase, at 686,802 to 688,400
_RS03070
QEN71_RS03075: QEN71_RS03075 - 50S ribosomal protein L33, at 688,634 to 688,801
_RS03075
QEN71_RS03080: QEN71_RS03080 - 50S ribosomal protein L28, at 688,812 to 689,045
_RS03080
QEN71_RS03085: QEN71_RS03085 - DNA repair protein RadC, at 689,303 to 690,031
_RS03085
QEN71_RS03090: QEN71_RS03090 - peptidylprolyl isomerase, at 690,221 to 690,676
_RS03090
QEN71_RS03095: QEN71_RS03095 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 690,679 to 691,638
_RS03095
Position (kb) 689
690
691 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 688.386 kb on + strand at 688.386 kb on + strand at 688.386 kb on + strand at 688.387 kb on - strand at 688.387 kb on - strand at 688.387 kb on - strand at 688.416 kb on + strand at 688.416 kb on + strand at 688.417 kb on - strand at 688.417 kb on - strand at 688.417 kb on - strand at 688.417 kb on - strand at 688.417 kb on - strand at 688.475 kb on + strand at 688.475 kb on + strand at 688.475 kb on + strand at 688.475 kb on + strand at 688.475 kb on + strand at 688.475 kb on + strand at 688.475 kb on + strand at 688.475 kb on + strand at 688.475 kb on + strand at 688.476 kb on - strand at 688.476 kb on - strand at 688.476 kb on - strand at 688.476 kb on - strand at 688.515 kb on + strand at 688.515 kb on + strand at 688.515 kb on + strand at 688.515 kb on + strand at 688.515 kb on + strand at 688.516 kb on - strand at 688.516 kb on - strand at 688.516 kb on - strand at 688.516 kb on - strand at 688.516 kb on - strand at 688.516 kb on - strand at 688.516 kb on - strand at 688.516 kb on - strand at 688.543 kb on + strand at 688.543 kb on + strand at 688.543 kb on + strand at 688.544 kb on - strand at 688.544 kb on - strand at 688.547 kb on - strand at 688.547 kb on - strand at 688.636 kb on - strand at 688.636 kb on - strand at 688.636 kb on - strand at 688.636 kb on - strand at 688.657 kb on - strand, within QEN71_RS03075 at 688.657 kb on - strand, within QEN71_RS03075 at 688.657 kb on - strand, within QEN71_RS03075 at 688.657 kb on - strand, within QEN71_RS03075 at 688.657 kb on - strand, within QEN71_RS03075 at 688.741 kb on - strand, within QEN71_RS03075 at 688.741 kb on - strand, within QEN71_RS03075 at 688.754 kb on - strand, within QEN71_RS03075 at 688.807 kb on - strand at 688.807 kb on - strand at 688.807 kb on - strand at 688.807 kb on - strand at 688.807 kb on - strand at 688.807 kb on - strand at 688.814 kb on - strand at 689.241 kb on - strand at 689.241 kb on - strand at 689.241 kb on - strand at 689.241 kb on - strand at 689.241 kb on - strand at 689.241 kb on - strand at 689.241 kb on - strand at 689.265 kb on + strand at 689.265 kb on + strand at 689.265 kb on + strand at 689.265 kb on + strand at 689.266 kb on - strand at 689.266 kb on - strand at 689.266 kb on - strand at 689.458 kb on + strand, within QEN71_RS03085 at 689.458 kb on + strand, within QEN71_RS03085 at 689.458 kb on + strand, within QEN71_RS03085 at 689.458 kb on + strand, within QEN71_RS03085 at 689.459 kb on - strand, within QEN71_RS03085 at 689.520 kb on + strand, within QEN71_RS03085 at 689.520 kb on + strand, within QEN71_RS03085 at 689.521 kb on - strand, within QEN71_RS03085 at 689.613 kb on + strand, within QEN71_RS03085 at 689.613 kb on + strand, within QEN71_RS03085 at 689.613 kb on + strand, within QEN71_RS03085 at 689.613 kb on + strand, within QEN71_RS03085 at 689.614 kb on - strand, within QEN71_RS03085 at 689.614 kb on - strand, within QEN71_RS03085 at 689.614 kb on - strand, within QEN71_RS03085 at 689.614 kb on - strand, within QEN71_RS03085 at 689.614 kb on - strand, within QEN71_RS03085 at 689.643 kb on + strand, within QEN71_RS03085 at 689.643 kb on + strand, within QEN71_RS03085 at 689.643 kb on + strand, within QEN71_RS03085 at 689.643 kb on + strand, within QEN71_RS03085 at 689.644 kb on - strand, within QEN71_RS03085 at 689.644 kb on - strand, within QEN71_RS03085 at 689.644 kb on - strand, within QEN71_RS03085 at 689.644 kb on - strand, within QEN71_RS03085 at 689.854 kb on + strand, within QEN71_RS03085 at 689.854 kb on + strand, within QEN71_RS03085 at 689.854 kb on + strand, within QEN71_RS03085 at 689.854 kb on + strand, within QEN71_RS03085 at 689.854 kb on + strand, within QEN71_RS03085 at 689.854 kb on + strand, within QEN71_RS03085 at 689.854 kb on + strand, within QEN71_RS03085 at 689.854 kb on + strand, within QEN71_RS03085 at 689.854 kb on + strand, within QEN71_RS03085 at 689.854 kb on + strand, within QEN71_RS03085 at 689.855 kb on - strand, within QEN71_RS03085 at 689.855 kb on - strand, within QEN71_RS03085 at 689.855 kb on - strand, within QEN71_RS03085 at 689.855 kb on - strand, within QEN71_RS03085 at 689.855 kb on - strand, within QEN71_RS03085 at 689.855 kb on - strand, within QEN71_RS03085 at 689.855 kb on - strand, within QEN71_RS03085 at 689.855 kb on - strand, within QEN71_RS03085 at 689.947 kb on + strand, within QEN71_RS03085 at 689.947 kb on + strand, within QEN71_RS03085 at 689.947 kb on + strand, within QEN71_RS03085 at 689.948 kb on - strand, within QEN71_RS03085 at 689.948 kb on - strand, within QEN71_RS03085 at 689.982 kb on - strand at 690.017 kb on + strand at 690.017 kb on + strand at 690.017 kb on + strand at 690.018 kb on - strand at 690.018 kb on - strand at 690.035 kb on + strand at 690.035 kb on + strand at 690.035 kb on + strand at 690.035 kb on + strand at 690.035 kb on + strand at 690.036 kb on - strand at 690.036 kb on - strand at 690.036 kb on - strand at 690.036 kb on - strand at 690.036 kb on - strand at 690.036 kb on - strand at 690.036 kb on - strand at 690.036 kb on - strand at 690.036 kb on - strand at 690.036 kb on - strand at 690.036 kb on - strand at 690.036 kb on - strand at 690.103 kb on + strand at 690.103 kb on + strand at 690.104 kb on - strand at 690.104 kb on - strand at 690.104 kb on - strand at 690.104 kb on - strand at 690.112 kb on + strand at 690.112 kb on + strand at 690.112 kb on + strand at 690.112 kb on + strand at 690.112 kb on + strand at 690.112 kb on + strand at 690.112 kb on + strand at 690.113 kb on - strand at 690.113 kb on - strand at 690.113 kb on - strand at 690.113 kb on - strand at 690.113 kb on - strand at 690.113 kb on - strand at 690.113 kb on - strand at 690.117 kb on + strand at 690.117 kb on + strand at 690.117 kb on + strand at 690.117 kb on + strand at 690.117 kb on + strand at 690.117 kb on + strand at 690.423 kb on + strand, within QEN71_RS03090 at 690.423 kb on + strand, within QEN71_RS03090 at 690.423 kb on + strand, within QEN71_RS03090 at 690.423 kb on + strand, within QEN71_RS03090 at 690.423 kb on + strand, within QEN71_RS03090 at 690.424 kb on - strand, within QEN71_RS03090 at 690.566 kb on + strand, within QEN71_RS03090 at 690.654 kb on + strand at 690.654 kb on + strand at 690.674 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 688,386 + +0.2 688,386 + -0.4 688,386 + -0.3 688,387 - -1.3 688,387 - -0.3 688,387 - -0.7 688,416 + -0.1 688,416 + -0.8 688,417 - -0.4 688,417 - -0.0 688,417 - +0.2 688,417 - +1.8 688,417 - -0.1 688,475 + -0.3 688,475 + +0.4 688,475 + +1.8 688,475 + +0.3 688,475 + +0.6 688,475 + -0.3 688,475 + -0.0 688,475 + -0.3 688,475 + -2.4 688,476 - +0.1 688,476 - -0.1 688,476 - -0.8 688,476 - +0.5 688,515 + -1.6 688,515 + -0.6 688,515 + +0.5 688,515 + -0.5 688,515 + -0.1 688,516 - -1.0 688,516 - -0.0 688,516 - +0.6 688,516 - -0.9 688,516 - -0.5 688,516 - -0.7 688,516 - -0.5 688,516 - +1.5 688,543 + +0.6 688,543 + +0.1 688,543 + -0.4 688,544 - +0.6 688,544 - +0.5 688,547 - +0.0 688,547 - +0.1 688,636 - +1.5 688,636 - +0.2 688,636 - +0.4 688,636 - +0.6 688,657 - QEN71_RS03075 0.14 +2.0 688,657 - QEN71_RS03075 0.14 +0.2 688,657 - QEN71_RS03075 0.14 +1.8 688,657 - QEN71_RS03075 0.14 +0.8 688,657 - QEN71_RS03075 0.14 +0.3 688,741 - QEN71_RS03075 0.64 -0.1 688,741 - QEN71_RS03075 0.64 +1.6 688,754 - QEN71_RS03075 0.71 -0.3 688,807 - -0.7 688,807 - +0.8 688,807 - -0.1 688,807 - -1.0 688,807 - +0.0 688,807 - +0.3 688,814 - +2.0 689,241 - +0.2 689,241 - +1.2 689,241 - +0.0 689,241 - -0.1 689,241 - +0.7 689,241 - -0.2 689,241 - -0.1 689,265 + +0.8 689,265 + -0.8 689,265 + -0.3 689,265 + +1.3 689,266 - +1.0 689,266 - -0.3 689,266 - +1.7 689,458 + QEN71_RS03085 0.21 +1.2 689,458 + QEN71_RS03085 0.21 +0.2 689,458 + QEN71_RS03085 0.21 +0.6 689,458 + QEN71_RS03085 0.21 +1.0 689,459 - QEN71_RS03085 0.21 +0.1 689,520 + QEN71_RS03085 0.30 +0.9 689,520 + QEN71_RS03085 0.30 -0.8 689,521 - QEN71_RS03085 0.30 -0.1 689,613 + QEN71_RS03085 0.43 -0.3 689,613 + QEN71_RS03085 0.43 +0.2 689,613 + QEN71_RS03085 0.43 +0.3 689,613 + QEN71_RS03085 0.43 +0.2 689,614 - QEN71_RS03085 0.43 +0.7 689,614 - QEN71_RS03085 0.43 +2.0 689,614 - QEN71_RS03085 0.43 -0.2 689,614 - QEN71_RS03085 0.43 +0.0 689,614 - QEN71_RS03085 0.43 -0.8 689,643 + QEN71_RS03085 0.47 +0.0 689,643 + QEN71_RS03085 0.47 +0.0 689,643 + QEN71_RS03085 0.47 +0.3 689,643 + QEN71_RS03085 0.47 -0.8 689,644 - QEN71_RS03085 0.47 +0.1 689,644 - QEN71_RS03085 0.47 +2.8 689,644 - QEN71_RS03085 0.47 -0.3 689,644 - QEN71_RS03085 0.47 +0.6 689,854 + QEN71_RS03085 0.76 +2.0 689,854 + QEN71_RS03085 0.76 -0.1 689,854 + QEN71_RS03085 0.76 -0.4 689,854 + QEN71_RS03085 0.76 -0.2 689,854 + QEN71_RS03085 0.76 -0.3 689,854 + QEN71_RS03085 0.76 +0.5 689,854 + QEN71_RS03085 0.76 +0.3 689,854 + QEN71_RS03085 0.76 +0.6 689,854 + QEN71_RS03085 0.76 -0.4 689,854 + QEN71_RS03085 0.76 +0.2 689,855 - QEN71_RS03085 0.76 -0.1 689,855 - QEN71_RS03085 0.76 -0.2 689,855 - QEN71_RS03085 0.76 -0.8 689,855 - QEN71_RS03085 0.76 -0.6 689,855 - QEN71_RS03085 0.76 -0.2 689,855 - QEN71_RS03085 0.76 +1.0 689,855 - QEN71_RS03085 0.76 -0.0 689,855 - QEN71_RS03085 0.76 -0.5 689,947 + QEN71_RS03085 0.88 +0.0 689,947 + QEN71_RS03085 0.88 +0.3 689,947 + QEN71_RS03085 0.88 -1.0 689,948 - QEN71_RS03085 0.88 -2.1 689,948 - QEN71_RS03085 0.88 -0.2 689,982 - +0.6 690,017 + -0.3 690,017 + -0.3 690,017 + -0.5 690,018 - +0.1 690,018 - -0.0 690,035 + -0.3 690,035 + -0.4 690,035 + -1.3 690,035 + -0.3 690,035 + -0.4 690,036 - +0.0 690,036 - +0.0 690,036 - +0.2 690,036 - -0.3 690,036 - -2.6 690,036 - +0.0 690,036 - +0.6 690,036 - -0.4 690,036 - -0.4 690,036 - -1.2 690,036 - -0.3 690,036 - -0.7 690,103 + -0.8 690,103 + -1.0 690,104 - +0.3 690,104 - -0.6 690,104 - +1.6 690,104 - +0.2 690,112 + -0.2 690,112 + +0.0 690,112 + -0.6 690,112 + -0.6 690,112 + +0.1 690,112 + -0.5 690,112 + -1.5 690,113 - +0.2 690,113 - -1.7 690,113 - -0.1 690,113 - -0.1 690,113 - -0.7 690,113 - -0.3 690,113 - -1.8 690,117 + -0.3 690,117 + -0.3 690,117 + -0.1 690,117 + +0.2 690,117 + +0.3 690,117 + -0.3 690,423 + QEN71_RS03090 0.44 -0.5 690,423 + QEN71_RS03090 0.44 -1.2 690,423 + QEN71_RS03090 0.44 -0.5 690,423 + QEN71_RS03090 0.44 +0.1 690,423 + QEN71_RS03090 0.44 -1.7 690,424 - QEN71_RS03090 0.45 +0.3 690,566 + QEN71_RS03090 0.76 -2.0 690,654 + -1.0 690,654 + -0.4 690,674 + +0.1
Or see this region's nucleotide sequence