Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS02105

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS02100 and QEN71_RS02105 are separated by 589 nucleotidesQEN71_RS02105 and QEN71_RS02110 are separated by 23 nucleotides QEN71_RS02100: QEN71_RS02100 - ABC transporter ATP-binding protein/permease, at 468,804 to 470,672 _RS02100 QEN71_RS02105: QEN71_RS02105 - nucleotidyltransferase family protein, at 471,262 to 471,951 _RS02105 QEN71_RS02110: QEN71_RS02110 - phosphotransferase, at 471,975 to 473,051 _RS02110 Position (kb) 471 472Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 470.267 kb on + strand, within QEN71_RS02100at 470.268 kb on - strand, within QEN71_RS02100at 470.301 kb on + strand, within QEN71_RS02100at 470.537 kb on + strandat 470.537 kb on + strandat 470.537 kb on + strandat 470.538 kb on - strandat 470.590 kb on + strandat 470.590 kb on + strandat 470.591 kb on - strandat 470.591 kb on - strandat 470.591 kb on - strandat 470.670 kb on + strandat 470.670 kb on + strandat 470.670 kb on + strandat 470.671 kb on - strandat 470.671 kb on - strandat 470.671 kb on - strandat 470.708 kb on - strandat 470.708 kb on - strandat 470.728 kb on - strandat 470.736 kb on - strandat 470.736 kb on - strandat 470.739 kb on - strandat 470.739 kb on - strandat 470.739 kb on - strandat 471.048 kb on + strandat 471.213 kb on + strandat 471.263 kb on + strandat 471.263 kb on + strandat 471.263 kb on + strandat 471.263 kb on + strandat 471.263 kb on + strandat 471.264 kb on - strandat 471.264 kb on - strandat 471.264 kb on - strandat 471.264 kb on - strandat 471.279 kb on + strandat 471.279 kb on + strandat 471.280 kb on - strandat 471.280 kb on - strandat 471.332 kb on + strand, within QEN71_RS02105at 471.332 kb on + strand, within QEN71_RS02105at 471.332 kb on + strand, within QEN71_RS02105at 471.332 kb on + strand, within QEN71_RS02105at 471.377 kb on + strand, within QEN71_RS02105at 471.377 kb on + strand, within QEN71_RS02105at 471.377 kb on + strand, within QEN71_RS02105at 471.377 kb on + strand, within QEN71_RS02105at 471.378 kb on - strand, within QEN71_RS02105at 471.378 kb on - strand, within QEN71_RS02105at 471.378 kb on - strand, within QEN71_RS02105at 471.378 kb on - strand, within QEN71_RS02105at 471.378 kb on - strand, within QEN71_RS02105at 471.378 kb on - strand, within QEN71_RS02105at 471.378 kb on - strand, within QEN71_RS02105at 471.378 kb on - strand, within QEN71_RS02105at 471.378 kb on - strand, within QEN71_RS02105at 471.418 kb on - strand, within QEN71_RS02105at 471.434 kb on + strand, within QEN71_RS02105at 471.434 kb on + strand, within QEN71_RS02105at 471.434 kb on + strand, within QEN71_RS02105at 471.435 kb on - strand, within QEN71_RS02105at 471.435 kb on - strand, within QEN71_RS02105at 471.444 kb on + strand, within QEN71_RS02105at 471.445 kb on - strand, within QEN71_RS02105at 471.456 kb on + strand, within QEN71_RS02105at 471.456 kb on + strand, within QEN71_RS02105at 471.456 kb on + strand, within QEN71_RS02105at 471.456 kb on + strand, within QEN71_RS02105at 471.456 kb on + strand, within QEN71_RS02105at 471.456 kb on + strand, within QEN71_RS02105at 471.456 kb on + strand, within QEN71_RS02105at 471.456 kb on + strand, within QEN71_RS02105at 471.457 kb on - strand, within QEN71_RS02105at 471.457 kb on - strand, within QEN71_RS02105at 471.457 kb on - strand, within QEN71_RS02105at 471.457 kb on - strand, within QEN71_RS02105at 471.457 kb on - strand, within QEN71_RS02105at 471.457 kb on - strand, within QEN71_RS02105at 471.457 kb on - strand, within QEN71_RS02105at 471.457 kb on - strand, within QEN71_RS02105at 471.457 kb on - strand, within QEN71_RS02105at 471.458 kb on + strand, within QEN71_RS02105at 471.534 kb on + strand, within QEN71_RS02105at 471.534 kb on + strand, within QEN71_RS02105at 471.534 kb on + strand, within QEN71_RS02105at 471.535 kb on - strand, within QEN71_RS02105at 471.535 kb on - strand, within QEN71_RS02105at 471.535 kb on - strand, within QEN71_RS02105at 471.608 kb on + strand, within QEN71_RS02105at 471.608 kb on + strand, within QEN71_RS02105at 471.609 kb on - strand, within QEN71_RS02105at 471.623 kb on + strand, within QEN71_RS02105at 471.623 kb on + strand, within QEN71_RS02105at 471.623 kb on + strand, within QEN71_RS02105at 471.624 kb on - strand, within QEN71_RS02105at 471.624 kb on - strand, within QEN71_RS02105at 471.624 kb on - strand, within QEN71_RS02105at 471.624 kb on - strand, within QEN71_RS02105at 471.624 kb on - strand, within QEN71_RS02105at 471.624 kb on - strand, within QEN71_RS02105at 471.734 kb on + strand, within QEN71_RS02105at 471.753 kb on - strand, within QEN71_RS02105at 471.753 kb on - strand, within QEN71_RS02105at 471.753 kb on - strand, within QEN71_RS02105at 471.985 kb on + strandat 471.986 kb on - strandat 471.986 kb on - strandat 471.986 kb on - strandat 472.105 kb on + strand, within QEN71_RS02110at 472.105 kb on + strand, within QEN71_RS02110at 472.105 kb on + strand, within QEN71_RS02110at 472.105 kb on + strand, within QEN71_RS02110at 472.105 kb on + strand, within QEN71_RS02110at 472.105 kb on + strand, within QEN71_RS02110at 472.105 kb on + strand, within QEN71_RS02110at 472.105 kb on + strand, within QEN71_RS02110at 472.105 kb on + strand, within QEN71_RS02110at 472.105 kb on + strand, within QEN71_RS02110at 472.105 kb on + strand, within QEN71_RS02110at 472.105 kb on + strand, within QEN71_RS02110at 472.105 kb on + strand, within QEN71_RS02110at 472.105 kb on + strand, within QEN71_RS02110at 472.105 kb on + strand, within QEN71_RS02110at 472.105 kb on + strand, within QEN71_RS02110at 472.105 kb on + strand, within QEN71_RS02110at 472.105 kb on + strand, within QEN71_RS02110at 472.105 kb on + strand, within QEN71_RS02110at 472.106 kb on - strand, within QEN71_RS02110at 472.106 kb on - strand, within QEN71_RS02110at 472.106 kb on - strand, within QEN71_RS02110at 472.106 kb on - strand, within QEN71_RS02110at 472.106 kb on - strand, within QEN71_RS02110at 472.106 kb on - strand, within QEN71_RS02110at 472.106 kb on - strand, within QEN71_RS02110at 472.106 kb on - strand, within QEN71_RS02110at 472.106 kb on - strand, within QEN71_RS02110at 472.106 kb on - strand, within QEN71_RS02110at 472.106 kb on - strand, within QEN71_RS02110at 472.106 kb on - strand, within QEN71_RS02110at 472.106 kb on - strand, within QEN71_RS02110at 472.106 kb on - strand, within QEN71_RS02110at 472.106 kb on - strand, within QEN71_RS02110at 472.106 kb on - strand, within QEN71_RS02110at 472.106 kb on - strand, within QEN71_RS02110at 472.106 kb on - strand, within QEN71_RS02110at 472.106 kb on - strand, within QEN71_RS02110at 472.126 kb on + strand, within QEN71_RS02110at 472.126 kb on + strand, within QEN71_RS02110at 472.127 kb on - strand, within QEN71_RS02110at 472.195 kb on + strand, within QEN71_RS02110at 472.252 kb on + strand, within QEN71_RS02110at 472.252 kb on + strand, within QEN71_RS02110at 472.252 kb on + strand, within QEN71_RS02110at 472.253 kb on - strand, within QEN71_RS02110at 472.255 kb on + strand, within QEN71_RS02110at 472.255 kb on + strand, within QEN71_RS02110at 472.255 kb on + strand, within QEN71_RS02110at 472.255 kb on + strand, within QEN71_RS02110at 472.255 kb on + strand, within QEN71_RS02110at 472.255 kb on + strand, within QEN71_RS02110at 472.256 kb on - strand, within QEN71_RS02110at 472.256 kb on - strand, within QEN71_RS02110at 472.256 kb on - strand, within QEN71_RS02110at 472.256 kb on - strand, within QEN71_RS02110at 472.256 kb on - strand, within QEN71_RS02110at 472.256 kb on - strand, within QEN71_RS02110at 472.256 kb on - strand, within QEN71_RS02110at 472.256 kb on - strand, within QEN71_RS02110at 472.256 kb on - strand, within QEN71_RS02110at 472.256 kb on - strand, within QEN71_RS02110at 472.256 kb on - strand, within QEN71_RS02110at 472.327 kb on + strand, within QEN71_RS02110at 472.327 kb on + strand, within QEN71_RS02110at 472.327 kb on + strand, within QEN71_RS02110at 472.327 kb on + strand, within QEN71_RS02110at 472.327 kb on + strand, within QEN71_RS02110at 472.327 kb on + strand, within QEN71_RS02110at 472.327 kb on + strand, within QEN71_RS02110at 472.328 kb on - strand, within QEN71_RS02110at 472.328 kb on - strand, within QEN71_RS02110at 472.328 kb on - strand, within QEN71_RS02110at 472.328 kb on - strand, within QEN71_RS02110at 472.328 kb on - strand, within QEN71_RS02110at 472.328 kb on - strand, within QEN71_RS02110at 472.328 kb on - strand, within QEN71_RS02110at 472.342 kb on + strand, within QEN71_RS02110at 472.343 kb on - strand, within QEN71_RS02110at 472.343 kb on - strand, within QEN71_RS02110at 472.343 kb on - strand, within QEN71_RS02110at 472.343 kb on - strand, within QEN71_RS02110at 472.690 kb on + strand, within QEN71_RS02110at 472.690 kb on + strand, within QEN71_RS02110at 472.690 kb on + strand, within QEN71_RS02110at 472.690 kb on + strand, within QEN71_RS02110at 472.690 kb on + strand, within QEN71_RS02110at 472.690 kb on + strand, within QEN71_RS02110at 472.691 kb on - strand, within QEN71_RS02110at 472.691 kb on - strand, within QEN71_RS02110at 472.691 kb on - strand, within QEN71_RS02110at 472.691 kb on - strand, within QEN71_RS02110at 472.691 kb on - strand, within QEN71_RS02110at 472.691 kb on - strand, within QEN71_RS02110at 472.894 kb on + strand, within QEN71_RS02110

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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470,267 + QEN71_RS02100 0.78 -0.2
470,268 - QEN71_RS02100 0.78 +0.3
470,301 + QEN71_RS02100 0.80 -0.4
470,537 + -0.1
470,537 + -2.6
470,537 + +0.4
470,538 - +0.8
470,590 + +0.3
470,590 + +2.0
470,591 - +0.2
470,591 - +0.8
470,591 - +0.0
470,670 + -0.7
470,670 + -0.8
470,670 + +0.2
470,671 - -0.2
470,671 - -0.6
470,671 - -0.6
470,708 - -0.2
470,708 - +0.2
470,728 - -1.8
470,736 - +0.6
470,736 - +1.4
470,739 - +0.6
470,739 - -0.7
470,739 - +0.4
471,048 + -0.6
471,213 + +0.2
471,263 + +0.5
471,263 + -0.7
471,263 + -0.2
471,263 + -0.6
471,263 + -0.7
471,264 - -1.0
471,264 - +0.2
471,264 - +0.5
471,264 - +1.5
471,279 + +0.2
471,279 + -0.6
471,280 - -0.1
471,280 - -0.1
471,332 + QEN71_RS02105 0.10 -3.4
471,332 + QEN71_RS02105 0.10 -1.8
471,332 + QEN71_RS02105 0.10 -0.4
471,332 + QEN71_RS02105 0.10 -1.5
471,377 + QEN71_RS02105 0.17 -2.5
471,377 + QEN71_RS02105 0.17 -1.0
471,377 + QEN71_RS02105 0.17 -0.9
471,377 + QEN71_RS02105 0.17 -0.8
471,378 - QEN71_RS02105 0.17 -2.0
471,378 - QEN71_RS02105 0.17 -1.9
471,378 - QEN71_RS02105 0.17 -2.8
471,378 - QEN71_RS02105 0.17 -1.4
471,378 - QEN71_RS02105 0.17 -1.1
471,378 - QEN71_RS02105 0.17 -1.6
471,378 - QEN71_RS02105 0.17 -1.0
471,378 - QEN71_RS02105 0.17 -1.8
471,378 - QEN71_RS02105 0.17 -0.9
471,418 - QEN71_RS02105 0.23 -1.4
471,434 + QEN71_RS02105 0.25 -1.3
471,434 + QEN71_RS02105 0.25 -1.9
471,434 + QEN71_RS02105 0.25 -1.7
471,435 - QEN71_RS02105 0.25 -1.9
471,435 - QEN71_RS02105 0.25 -0.9
471,444 + QEN71_RS02105 0.26 -0.0
471,445 - QEN71_RS02105 0.27 +0.1
471,456 + QEN71_RS02105 0.28 -1.2
471,456 + QEN71_RS02105 0.28 -1.7
471,456 + QEN71_RS02105 0.28 -1.2
471,456 + QEN71_RS02105 0.28 -0.9
471,456 + QEN71_RS02105 0.28 -2.0
471,456 + QEN71_RS02105 0.28 +0.1
471,456 + QEN71_RS02105 0.28 -1.2
471,456 + QEN71_RS02105 0.28 -0.4
471,457 - QEN71_RS02105 0.28 -1.1
471,457 - QEN71_RS02105 0.28 -0.2
471,457 - QEN71_RS02105 0.28 -0.6
471,457 - QEN71_RS02105 0.28 -1.2
471,457 - QEN71_RS02105 0.28 -0.3
471,457 - QEN71_RS02105 0.28 -1.4
471,457 - QEN71_RS02105 0.28 -1.9
471,457 - QEN71_RS02105 0.28 -2.3
471,457 - QEN71_RS02105 0.28 -1.3
471,458 + QEN71_RS02105 0.28 -0.5
471,534 + QEN71_RS02105 0.39 +0.3
471,534 + QEN71_RS02105 0.39 -1.4
471,534 + QEN71_RS02105 0.39 -0.9
471,535 - QEN71_RS02105 0.40 -2.1
471,535 - QEN71_RS02105 0.40 -2.2
471,535 - QEN71_RS02105 0.40 -1.5
471,608 + QEN71_RS02105 0.50 -0.8
471,608 + QEN71_RS02105 0.50 -2.6
471,609 - QEN71_RS02105 0.50 -1.4
471,623 + QEN71_RS02105 0.52 -1.5
471,623 + QEN71_RS02105 0.52 -1.6
471,623 + QEN71_RS02105 0.52 -1.7
471,624 - QEN71_RS02105 0.52 -0.5
471,624 - QEN71_RS02105 0.52 -2.3
471,624 - QEN71_RS02105 0.52 -1.2
471,624 - QEN71_RS02105 0.52 -1.2
471,624 - QEN71_RS02105 0.52 -0.5
471,624 - QEN71_RS02105 0.52 -2.2
471,734 + QEN71_RS02105 0.68 -2.2
471,753 - QEN71_RS02105 0.71 -2.1
471,753 - QEN71_RS02105 0.71 -2.2
471,753 - QEN71_RS02105 0.71 -1.6
471,985 + -0.2
471,986 - +0.0
471,986 - +0.0
471,986 - -0.1
472,105 + QEN71_RS02110 0.12 +0.2
472,105 + QEN71_RS02110 0.12 -0.2
472,105 + QEN71_RS02110 0.12 -0.6
472,105 + QEN71_RS02110 0.12 +0.4
472,105 + QEN71_RS02110 0.12 -0.6
472,105 + QEN71_RS02110 0.12 +0.1
472,105 + QEN71_RS02110 0.12 +0.7
472,105 + QEN71_RS02110 0.12 -1.4
472,105 + QEN71_RS02110 0.12 -1.2
472,105 + QEN71_RS02110 0.12 +0.3
472,105 + QEN71_RS02110 0.12 -2.0
472,105 + QEN71_RS02110 0.12 -0.3
472,105 + QEN71_RS02110 0.12 +0.2
472,105 + QEN71_RS02110 0.12 -0.1
472,105 + QEN71_RS02110 0.12 -0.7
472,105 + QEN71_RS02110 0.12 +1.5
472,105 + QEN71_RS02110 0.12 +0.7
472,105 + QEN71_RS02110 0.12 +0.1
472,105 + QEN71_RS02110 0.12 -0.5
472,106 - QEN71_RS02110 0.12 +0.0
472,106 - QEN71_RS02110 0.12 -0.4
472,106 - QEN71_RS02110 0.12 +2.4
472,106 - QEN71_RS02110 0.12 -0.6
472,106 - QEN71_RS02110 0.12 -0.4
472,106 - QEN71_RS02110 0.12 +0.1
472,106 - QEN71_RS02110 0.12 -0.2
472,106 - QEN71_RS02110 0.12 -0.0
472,106 - QEN71_RS02110 0.12 +0.6
472,106 - QEN71_RS02110 0.12 +0.4
472,106 - QEN71_RS02110 0.12 -0.4
472,106 - QEN71_RS02110 0.12 -0.5
472,106 - QEN71_RS02110 0.12 +0.3
472,106 - QEN71_RS02110 0.12 -0.3
472,106 - QEN71_RS02110 0.12 +0.2
472,106 - QEN71_RS02110 0.12 +0.3
472,106 - QEN71_RS02110 0.12 +0.7
472,106 - QEN71_RS02110 0.12 +0.3
472,106 - QEN71_RS02110 0.12 -0.3
472,126 + QEN71_RS02110 0.14 -0.8
472,126 + QEN71_RS02110 0.14 +0.9
472,127 - QEN71_RS02110 0.14 -0.3
472,195 + QEN71_RS02110 0.20 +1.1
472,252 + QEN71_RS02110 0.26 +0.1
472,252 + QEN71_RS02110 0.26 +0.1
472,252 + QEN71_RS02110 0.26 +0.1
472,253 - QEN71_RS02110 0.26 -0.8
472,255 + QEN71_RS02110 0.26 -0.7
472,255 + QEN71_RS02110 0.26 +1.7
472,255 + QEN71_RS02110 0.26 +0.2
472,255 + QEN71_RS02110 0.26 -0.2
472,255 + QEN71_RS02110 0.26 -0.6
472,255 + QEN71_RS02110 0.26 +0.0
472,256 - QEN71_RS02110 0.26 -1.2
472,256 - QEN71_RS02110 0.26 -0.2
472,256 - QEN71_RS02110 0.26 -1.1
472,256 - QEN71_RS02110 0.26 -1.6
472,256 - QEN71_RS02110 0.26 -0.6
472,256 - QEN71_RS02110 0.26 +0.1
472,256 - QEN71_RS02110 0.26 +0.6
472,256 - QEN71_RS02110 0.26 -0.5
472,256 - QEN71_RS02110 0.26 -1.2
472,256 - QEN71_RS02110 0.26 +1.1
472,256 - QEN71_RS02110 0.26 +0.3
472,327 + QEN71_RS02110 0.33 -1.4
472,327 + QEN71_RS02110 0.33 +0.7
472,327 + QEN71_RS02110 0.33 -0.3
472,327 + QEN71_RS02110 0.33 +1.0
472,327 + QEN71_RS02110 0.33 +0.7
472,327 + QEN71_RS02110 0.33 +0.8
472,327 + QEN71_RS02110 0.33 +0.8
472,328 - QEN71_RS02110 0.33 -2.2
472,328 - QEN71_RS02110 0.33 -0.4
472,328 - QEN71_RS02110 0.33 -1.2
472,328 - QEN71_RS02110 0.33 +0.2
472,328 - QEN71_RS02110 0.33 -1.1
472,328 - QEN71_RS02110 0.33 +1.1
472,328 - QEN71_RS02110 0.33 -0.5
472,342 + QEN71_RS02110 0.34 -0.5
472,343 - QEN71_RS02110 0.34 +0.3
472,343 - QEN71_RS02110 0.34 +0.7
472,343 - QEN71_RS02110 0.34 +0.3
472,343 - QEN71_RS02110 0.34 +0.6
472,690 + QEN71_RS02110 0.66 +0.6
472,690 + QEN71_RS02110 0.66 +0.4
472,690 + QEN71_RS02110 0.66 +2.1
472,690 + QEN71_RS02110 0.66 -0.4
472,690 + QEN71_RS02110 0.66 +0.1
472,690 + QEN71_RS02110 0.66 -0.9
472,691 - QEN71_RS02110 0.66 -0.5
472,691 - QEN71_RS02110 0.66 -0.1
472,691 - QEN71_RS02110 0.66 -0.4
472,691 - QEN71_RS02110 0.66 +0.1
472,691 - QEN71_RS02110 0.66 -0.3
472,691 - QEN71_RS02110 0.66 -0.5
472,894 + QEN71_RS02110 0.85 -0.0

Or see this region's nucleotide sequence