Experiment: 2-Deoxy-D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS01540 and QEN71_RS01545 are separated by 6 nucleotides QEN71_RS01545 and QEN71_RS01550 are separated by 4 nucleotides QEN71_RS01550 and QEN71_RS01555 are separated by 98 nucleotides
QEN71_RS01540: QEN71_RS01540 - COX15/CtaA family protein, at 340,197 to 341,306
_RS01540
QEN71_RS01545: QEN71_RS01545 - heme o synthase, at 341,313 to 342,218
_RS01545
QEN71_RS01550: QEN71_RS01550 - SCO family protein, at 342,223 to 342,840
_RS01550
QEN71_RS01555: QEN71_RS01555 - YciI family protein, at 342,939 to 343,229
_RS01555
Position (kb) 341
342
343 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 340.395 kb on + strand, within QEN71_RS01540 at 340.395 kb on + strand, within QEN71_RS01540 at 340.396 kb on - strand, within QEN71_RS01540 at 340.396 kb on - strand, within QEN71_RS01540 at 340.396 kb on - strand, within QEN71_RS01540 at 340.443 kb on + strand, within QEN71_RS01540 at 340.444 kb on - strand, within QEN71_RS01540 at 340.506 kb on + strand, within QEN71_RS01540 at 340.506 kb on + strand, within QEN71_RS01540 at 340.506 kb on + strand, within QEN71_RS01540 at 340.506 kb on + strand, within QEN71_RS01540 at 340.507 kb on - strand, within QEN71_RS01540 at 340.507 kb on - strand, within QEN71_RS01540 at 340.507 kb on - strand, within QEN71_RS01540 at 340.522 kb on + strand, within QEN71_RS01540 at 340.688 kb on + strand, within QEN71_RS01540 at 340.767 kb on + strand, within QEN71_RS01540 at 340.767 kb on + strand, within QEN71_RS01540 at 340.767 kb on + strand, within QEN71_RS01540 at 340.767 kb on + strand, within QEN71_RS01540 at 340.767 kb on + strand, within QEN71_RS01540 at 340.767 kb on + strand, within QEN71_RS01540 at 340.767 kb on + strand, within QEN71_RS01540 at 340.768 kb on - strand, within QEN71_RS01540 at 340.863 kb on + strand, within QEN71_RS01540 at 340.863 kb on + strand, within QEN71_RS01540 at 340.863 kb on + strand, within QEN71_RS01540 at 340.863 kb on + strand, within QEN71_RS01540 at 340.863 kb on + strand, within QEN71_RS01540 at 340.863 kb on + strand, within QEN71_RS01540 at 340.863 kb on + strand, within QEN71_RS01540 at 340.864 kb on - strand, within QEN71_RS01540 at 340.864 kb on - strand, within QEN71_RS01540 at 340.864 kb on - strand, within QEN71_RS01540 at 340.864 kb on - strand, within QEN71_RS01540 at 340.864 kb on - strand, within QEN71_RS01540 at 340.864 kb on - strand, within QEN71_RS01540 at 341.049 kb on + strand, within QEN71_RS01540 at 341.049 kb on + strand, within QEN71_RS01540 at 341.050 kb on - strand, within QEN71_RS01540 at 341.050 kb on - strand, within QEN71_RS01540 at 341.050 kb on - strand, within QEN71_RS01540 at 341.231 kb on + strand at 341.231 kb on + strand at 341.231 kb on + strand at 341.231 kb on + strand at 341.231 kb on + strand at 341.232 kb on - strand at 341.232 kb on - strand at 341.232 kb on - strand at 341.232 kb on - strand at 341.232 kb on - strand at 341.232 kb on - strand at 341.232 kb on - strand at 341.232 kb on - strand at 341.232 kb on - strand at 341.232 kb on - strand at 341.253 kb on + strand at 341.253 kb on + strand at 341.254 kb on - strand at 341.254 kb on - strand at 341.254 kb on - strand at 341.254 kb on - strand at 341.255 kb on + strand at 341.255 kb on + strand at 341.255 kb on + strand at 341.255 kb on + strand at 341.255 kb on + strand at 341.255 kb on + strand at 341.255 kb on + strand at 341.256 kb on - strand at 341.256 kb on - strand at 341.256 kb on - strand at 341.256 kb on - strand at 341.361 kb on + strand at 341.362 kb on - strand at 341.362 kb on - strand at 341.649 kb on + strand, within QEN71_RS01545 at 341.650 kb on - strand, within QEN71_RS01545 at 341.650 kb on - strand, within QEN71_RS01545 at 341.650 kb on - strand, within QEN71_RS01545 at 341.650 kb on - strand, within QEN71_RS01545 at 341.685 kb on - strand, within QEN71_RS01545 at 341.716 kb on - strand, within QEN71_RS01545 at 341.716 kb on - strand, within QEN71_RS01545 at 341.716 kb on - strand, within QEN71_RS01545 at 341.716 kb on - strand, within QEN71_RS01545 at 341.716 kb on - strand, within QEN71_RS01545 at 341.738 kb on + strand, within QEN71_RS01545 at 341.739 kb on - strand, within QEN71_RS01545 at 341.908 kb on - strand, within QEN71_RS01545 at 341.956 kb on - strand, within QEN71_RS01545 at 341.956 kb on - strand, within QEN71_RS01545 at 341.969 kb on + strand, within QEN71_RS01545 at 341.979 kb on + strand, within QEN71_RS01545 at 341.980 kb on - strand, within QEN71_RS01545 at 341.980 kb on - strand, within QEN71_RS01545 at 342.042 kb on + strand, within QEN71_RS01545 at 342.042 kb on + strand, within QEN71_RS01545 at 342.042 kb on + strand, within QEN71_RS01545 at 342.043 kb on - strand, within QEN71_RS01545 at 342.043 kb on - strand, within QEN71_RS01545 at 342.099 kb on + strand, within QEN71_RS01545 at 342.100 kb on - strand, within QEN71_RS01545 at 342.128 kb on + strand at 342.128 kb on + strand at 342.153 kb on + strand at 342.154 kb on - strand at 342.154 kb on - strand at 342.192 kb on + strand at 342.193 kb on - strand at 342.193 kb on - strand at 342.193 kb on - strand at 342.339 kb on + strand, within QEN71_RS01550 at 342.339 kb on + strand, within QEN71_RS01550 at 342.363 kb on + strand, within QEN71_RS01550 at 342.415 kb on + strand, within QEN71_RS01550 at 342.415 kb on + strand, within QEN71_RS01550 at 342.415 kb on + strand, within QEN71_RS01550 at 342.415 kb on + strand, within QEN71_RS01550 at 342.415 kb on + strand, within QEN71_RS01550 at 342.415 kb on + strand, within QEN71_RS01550 at 342.415 kb on + strand, within QEN71_RS01550 at 342.415 kb on + strand, within QEN71_RS01550 at 342.415 kb on + strand, within QEN71_RS01550 at 342.416 kb on - strand, within QEN71_RS01550 at 342.416 kb on - strand, within QEN71_RS01550 at 342.416 kb on - strand, within QEN71_RS01550 at 342.416 kb on - strand, within QEN71_RS01550 at 342.416 kb on - strand, within QEN71_RS01550 at 342.416 kb on - strand, within QEN71_RS01550 at 342.416 kb on - strand, within QEN71_RS01550 at 342.416 kb on - strand, within QEN71_RS01550 at 342.449 kb on - strand, within QEN71_RS01550 at 342.450 kb on + strand, within QEN71_RS01550 at 342.450 kb on + strand, within QEN71_RS01550 at 342.450 kb on + strand, within QEN71_RS01550 at 342.450 kb on + strand, within QEN71_RS01550 at 342.450 kb on + strand, within QEN71_RS01550 at 342.450 kb on + strand, within QEN71_RS01550 at 342.450 kb on + strand, within QEN71_RS01550 at 342.450 kb on + strand, within QEN71_RS01550 at 342.451 kb on - strand, within QEN71_RS01550 at 342.451 kb on - strand, within QEN71_RS01550 at 342.451 kb on - strand, within QEN71_RS01550 at 342.451 kb on - strand, within QEN71_RS01550 at 342.573 kb on + strand, within QEN71_RS01550 at 342.574 kb on - strand, within QEN71_RS01550 at 342.595 kb on + strand, within QEN71_RS01550 at 342.595 kb on + strand, within QEN71_RS01550 at 342.595 kb on + strand, within QEN71_RS01550 at 342.595 kb on + strand, within QEN71_RS01550 at 342.596 kb on - strand, within QEN71_RS01550 at 342.596 kb on - strand, within QEN71_RS01550 at 342.596 kb on - strand, within QEN71_RS01550 at 342.596 kb on - strand, within QEN71_RS01550 at 342.596 kb on - strand, within QEN71_RS01550 at 342.596 kb on - strand, within QEN71_RS01550 at 342.682 kb on + strand, within QEN71_RS01550 at 342.682 kb on + strand, within QEN71_RS01550 at 342.682 kb on + strand, within QEN71_RS01550 at 342.682 kb on + strand, within QEN71_RS01550 at 342.682 kb on + strand, within QEN71_RS01550 at 342.683 kb on - strand, within QEN71_RS01550 at 342.685 kb on + strand, within QEN71_RS01550 at 342.685 kb on + strand, within QEN71_RS01550 at 342.685 kb on + strand, within QEN71_RS01550 at 342.686 kb on - strand, within QEN71_RS01550 at 342.686 kb on - strand, within QEN71_RS01550 at 342.718 kb on + strand, within QEN71_RS01550 at 342.718 kb on + strand, within QEN71_RS01550 at 342.718 kb on + strand, within QEN71_RS01550 at 342.718 kb on + strand, within QEN71_RS01550 at 342.718 kb on + strand, within QEN71_RS01550 at 342.719 kb on - strand, within QEN71_RS01550 at 342.719 kb on - strand, within QEN71_RS01550 at 342.719 kb on - strand, within QEN71_RS01550 at 342.719 kb on - strand, within QEN71_RS01550 at 342.719 kb on - strand, within QEN71_RS01550 at 342.719 kb on - strand, within QEN71_RS01550 at 342.719 kb on - strand, within QEN71_RS01550 at 342.719 kb on - strand, within QEN71_RS01550 at 342.719 kb on - strand, within QEN71_RS01550 at 342.745 kb on + strand, within QEN71_RS01550 at 342.745 kb on + strand, within QEN71_RS01550 at 342.745 kb on + strand, within QEN71_RS01550 at 342.745 kb on + strand, within QEN71_RS01550 at 342.745 kb on + strand, within QEN71_RS01550 at 342.745 kb on + strand, within QEN71_RS01550 at 342.745 kb on + strand, within QEN71_RS01550 at 342.745 kb on + strand, within QEN71_RS01550 at 342.745 kb on + strand, within QEN71_RS01550 at 342.745 kb on + strand, within QEN71_RS01550 at 342.745 kb on + strand, within QEN71_RS01550 at 342.745 kb on + strand, within QEN71_RS01550 at 342.745 kb on + strand, within QEN71_RS01550 at 342.745 kb on + strand, within QEN71_RS01550 at 342.745 kb on + strand, within QEN71_RS01550 at 342.745 kb on + strand, within QEN71_RS01550 at 342.746 kb on - strand, within QEN71_RS01550 at 342.746 kb on - strand, within QEN71_RS01550 at 342.746 kb on - strand, within QEN71_RS01550 at 342.746 kb on - strand, within QEN71_RS01550 at 342.746 kb on - strand, within QEN71_RS01550 at 342.746 kb on - strand, within QEN71_RS01550 at 342.746 kb on - strand, within QEN71_RS01550 at 342.746 kb on - strand, within QEN71_RS01550 at 342.846 kb on + strand at 342.846 kb on + strand at 342.846 kb on + strand at 342.846 kb on + strand at 342.847 kb on - strand at 342.847 kb on - strand at 342.847 kb on - strand at 342.847 kb on - strand at 342.847 kb on - strand at 342.847 kb on - strand at 342.847 kb on - strand at 342.851 kb on + strand at 342.851 kb on + strand at 342.851 kb on + strand at 342.851 kb on + strand at 342.851 kb on + strand at 342.851 kb on + strand at 342.851 kb on + strand at 342.851 kb on + strand at 342.852 kb on - strand at 342.852 kb on - strand at 342.852 kb on - strand at 342.852 kb on - strand at 342.852 kb on - strand at 342.852 kb on - strand at 343.004 kb on - strand, within QEN71_RS01555 at 343.004 kb on - strand, within QEN71_RS01555 at 343.207 kb on + strand at 343.207 kb on + strand at 343.207 kb on + strand at 343.207 kb on + strand at 343.208 kb on - strand at 343.208 kb on - strand at 343.208 kb on - strand at 343.208 kb on - strand at 343.208 kb on - strand at 343.208 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C) remove 340,395 + QEN71_RS01540 0.18 +0.2 340,395 + QEN71_RS01540 0.18 +0.1 340,396 - QEN71_RS01540 0.18 -1.0 340,396 - QEN71_RS01540 0.18 -1.2 340,396 - QEN71_RS01540 0.18 +0.1 340,443 + QEN71_RS01540 0.22 -0.3 340,444 - QEN71_RS01540 0.22 +0.1 340,506 + QEN71_RS01540 0.28 +0.1 340,506 + QEN71_RS01540 0.28 +0.8 340,506 + QEN71_RS01540 0.28 -0.7 340,506 + QEN71_RS01540 0.28 -0.8 340,507 - QEN71_RS01540 0.28 -0.1 340,507 - QEN71_RS01540 0.28 -0.2 340,507 - QEN71_RS01540 0.28 -0.4 340,522 + QEN71_RS01540 0.29 -0.6 340,688 + QEN71_RS01540 0.44 +0.1 340,767 + QEN71_RS01540 0.51 +0.7 340,767 + QEN71_RS01540 0.51 -1.4 340,767 + QEN71_RS01540 0.51 -1.2 340,767 + QEN71_RS01540 0.51 -0.5 340,767 + QEN71_RS01540 0.51 -1.4 340,767 + QEN71_RS01540 0.51 +0.2 340,767 + QEN71_RS01540 0.51 -0.2 340,768 - QEN71_RS01540 0.51 -1.6 340,863 + QEN71_RS01540 0.60 -0.9 340,863 + QEN71_RS01540 0.60 -0.5 340,863 + QEN71_RS01540 0.60 -1.2 340,863 + QEN71_RS01540 0.60 +0.1 340,863 + QEN71_RS01540 0.60 -0.1 340,863 + QEN71_RS01540 0.60 -1.0 340,863 + QEN71_RS01540 0.60 -1.1 340,864 - QEN71_RS01540 0.60 -1.5 340,864 - QEN71_RS01540 0.60 -0.5 340,864 - QEN71_RS01540 0.60 -1.3 340,864 - QEN71_RS01540 0.60 -1.5 340,864 - QEN71_RS01540 0.60 -1.0 340,864 - QEN71_RS01540 0.60 -0.7 341,049 + QEN71_RS01540 0.77 -0.6 341,049 + QEN71_RS01540 0.77 -0.6 341,050 - QEN71_RS01540 0.77 -0.2 341,050 - QEN71_RS01540 0.77 -0.5 341,050 - QEN71_RS01540 0.77 -1.7 341,231 + +0.9 341,231 + +0.8 341,231 + +1.5 341,231 + -0.7 341,231 + +0.1 341,232 - -0.9 341,232 - -0.7 341,232 - -1.3 341,232 - -1.0 341,232 - -0.3 341,232 - -2.2 341,232 - +0.8 341,232 - -0.6 341,232 - +1.1 341,232 - -0.8 341,253 + +0.4 341,253 + +0.6 341,254 - +0.6 341,254 - +0.1 341,254 - -1.2 341,254 - -0.2 341,255 + -0.8 341,255 + +0.1 341,255 + -1.2 341,255 + +2.7 341,255 + -0.2 341,255 + +0.1 341,255 + -0.7 341,256 - -0.5 341,256 - +0.1 341,256 - -0.1 341,256 - -0.7 341,361 + +0.1 341,362 - -0.7 341,362 - -1.4 341,649 + QEN71_RS01545 0.37 -0.7 341,650 - QEN71_RS01545 0.37 +0.1 341,650 - QEN71_RS01545 0.37 -0.2 341,650 - QEN71_RS01545 0.37 +0.1 341,650 - QEN71_RS01545 0.37 -0.5 341,685 - QEN71_RS01545 0.41 +2.1 341,716 - QEN71_RS01545 0.44 -0.8 341,716 - QEN71_RS01545 0.44 -0.5 341,716 - QEN71_RS01545 0.44 -0.2 341,716 - QEN71_RS01545 0.44 -1.5 341,716 - QEN71_RS01545 0.44 -0.5 341,738 + QEN71_RS01545 0.47 -0.7 341,739 - QEN71_RS01545 0.47 -0.2 341,908 - QEN71_RS01545 0.66 +0.1 341,956 - QEN71_RS01545 0.71 -1.5 341,956 - QEN71_RS01545 0.71 +1.1 341,969 + QEN71_RS01545 0.72 +0.1 341,979 + QEN71_RS01545 0.74 -0.2 341,980 - QEN71_RS01545 0.74 -1.2 341,980 - QEN71_RS01545 0.74 -0.7 342,042 + QEN71_RS01545 0.80 -0.5 342,042 + QEN71_RS01545 0.80 -0.7 342,042 + QEN71_RS01545 0.80 -1.1 342,043 - QEN71_RS01545 0.81 -0.9 342,043 - QEN71_RS01545 0.81 +0.1 342,099 + QEN71_RS01545 0.87 -1.0 342,100 - QEN71_RS01545 0.87 -0.5 342,128 + +0.1 342,128 + -1.2 342,153 + -0.5 342,154 - -0.9 342,154 - +0.1 342,192 + -0.3 342,193 - +0.2 342,193 - +0.9 342,193 - -1.1 342,339 + QEN71_RS01550 0.19 -2.1 342,339 + QEN71_RS01550 0.19 -0.2 342,363 + QEN71_RS01550 0.23 +0.5 342,415 + QEN71_RS01550 0.31 +0.1 342,415 + QEN71_RS01550 0.31 +0.1 342,415 + QEN71_RS01550 0.31 +1.1 342,415 + QEN71_RS01550 0.31 +2.1 342,415 + QEN71_RS01550 0.31 -0.3 342,415 + QEN71_RS01550 0.31 -0.5 342,415 + QEN71_RS01550 0.31 +0.6 342,415 + QEN71_RS01550 0.31 -1.4 342,415 + QEN71_RS01550 0.31 +1.0 342,416 - QEN71_RS01550 0.31 -1.0 342,416 - QEN71_RS01550 0.31 -0.2 342,416 - QEN71_RS01550 0.31 +0.5 342,416 - QEN71_RS01550 0.31 -2.1 342,416 - QEN71_RS01550 0.31 -0.4 342,416 - QEN71_RS01550 0.31 -0.6 342,416 - QEN71_RS01550 0.31 -0.7 342,416 - QEN71_RS01550 0.31 -0.9 342,449 - QEN71_RS01550 0.37 -0.2 342,450 + QEN71_RS01550 0.37 +0.6 342,450 + QEN71_RS01550 0.37 -0.4 342,450 + QEN71_RS01550 0.37 -0.2 342,450 + QEN71_RS01550 0.37 -0.3 342,450 + QEN71_RS01550 0.37 -0.2 342,450 + QEN71_RS01550 0.37 -1.8 342,450 + QEN71_RS01550 0.37 +1.4 342,450 + QEN71_RS01550 0.37 +1.0 342,451 - QEN71_RS01550 0.37 -0.4 342,451 - QEN71_RS01550 0.37 +1.3 342,451 - QEN71_RS01550 0.37 -0.0 342,451 - QEN71_RS01550 0.37 -1.4 342,573 + QEN71_RS01550 0.57 +0.3 342,574 - QEN71_RS01550 0.57 -0.0 342,595 + QEN71_RS01550 0.60 +0.3 342,595 + QEN71_RS01550 0.60 +0.7 342,595 + QEN71_RS01550 0.60 -1.2 342,595 + QEN71_RS01550 0.60 +0.4 342,596 - QEN71_RS01550 0.60 -1.1 342,596 - QEN71_RS01550 0.60 -0.7 342,596 - QEN71_RS01550 0.60 -1.1 342,596 - QEN71_RS01550 0.60 +1.7 342,596 - QEN71_RS01550 0.60 -1.9 342,596 - QEN71_RS01550 0.60 +0.2 342,682 + QEN71_RS01550 0.74 +0.7 342,682 + QEN71_RS01550 0.74 -0.9 342,682 + QEN71_RS01550 0.74 -1.8 342,682 + QEN71_RS01550 0.74 +0.4 342,682 + QEN71_RS01550 0.74 +0.5 342,683 - QEN71_RS01550 0.74 +0.6 342,685 + QEN71_RS01550 0.75 -0.2 342,685 + QEN71_RS01550 0.75 +0.9 342,685 + QEN71_RS01550 0.75 -0.6 342,686 - QEN71_RS01550 0.75 -2.8 342,686 - QEN71_RS01550 0.75 -0.7 342,718 + QEN71_RS01550 0.80 -0.2 342,718 + QEN71_RS01550 0.80 -0.2 342,718 + QEN71_RS01550 0.80 -0.6 342,718 + QEN71_RS01550 0.80 -1.4 342,718 + QEN71_RS01550 0.80 -0.4 342,719 - QEN71_RS01550 0.80 -0.2 342,719 - QEN71_RS01550 0.80 -0.7 342,719 - QEN71_RS01550 0.80 -0.2 342,719 - QEN71_RS01550 0.80 -0.8 342,719 - QEN71_RS01550 0.80 -3.5 342,719 - QEN71_RS01550 0.80 -1.5 342,719 - QEN71_RS01550 0.80 -0.2 342,719 - QEN71_RS01550 0.80 -1.1 342,719 - QEN71_RS01550 0.80 -0.3 342,745 + QEN71_RS01550 0.84 +1.0 342,745 + QEN71_RS01550 0.84 -2.0 342,745 + QEN71_RS01550 0.84 -0.2 342,745 + QEN71_RS01550 0.84 +0.6 342,745 + QEN71_RS01550 0.84 -0.0 342,745 + QEN71_RS01550 0.84 -0.7 342,745 + QEN71_RS01550 0.84 -1.0 342,745 + QEN71_RS01550 0.84 +0.8 342,745 + QEN71_RS01550 0.84 -0.5 342,745 + QEN71_RS01550 0.84 -0.6 342,745 + QEN71_RS01550 0.84 -0.3 342,745 + QEN71_RS01550 0.84 +0.1 342,745 + QEN71_RS01550 0.84 -1.1 342,745 + QEN71_RS01550 0.84 +0.0 342,745 + QEN71_RS01550 0.84 +0.5 342,745 + QEN71_RS01550 0.84 +0.4 342,746 - QEN71_RS01550 0.85 +1.1 342,746 - QEN71_RS01550 0.85 +0.1 342,746 - QEN71_RS01550 0.85 -0.9 342,746 - QEN71_RS01550 0.85 -1.3 342,746 - QEN71_RS01550 0.85 -2.2 342,746 - QEN71_RS01550 0.85 -0.2 342,746 - QEN71_RS01550 0.85 +0.3 342,746 - QEN71_RS01550 0.85 -0.4 342,846 + +0.2 342,846 + -1.4 342,846 + +0.3 342,846 + -0.2 342,847 - -0.6 342,847 - -0.5 342,847 - +0.4 342,847 - -0.4 342,847 - -0.3 342,847 - +0.7 342,847 - +0.9 342,851 + +0.2 342,851 + -0.5 342,851 + +0.3 342,851 + +0.2 342,851 + -0.0 342,851 + -1.3 342,851 + +0.2 342,851 + -0.3 342,852 - +0.1 342,852 - -0.9 342,852 - +1.5 342,852 - -0.2 342,852 - +2.1 342,852 - -0.6 343,004 - QEN71_RS01555 0.22 +0.1 343,004 - QEN71_RS01555 0.22 -0.8 343,207 + +0.9 343,207 + -0.4 343,207 + -0.2 343,207 + -1.5 343,208 - +1.5 343,208 - +2.1 343,208 - +1.6 343,208 - -1.7 343,208 - +0.2 343,208 - +0.1
Or see this region's nucleotide sequence