Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS00535

Experiment: 2-Deoxy-D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS00530 and QEN71_RS00535 overlap by 11 nucleotidesQEN71_RS00535 and QEN71_RS00540 are separated by 299 nucleotides QEN71_RS00530: QEN71_RS00530 - ABC transporter permease, at 114,019 to 115,020 _RS00530 QEN71_RS00535: QEN71_RS00535 - sugar ABC transporter ATP-binding protein, at 115,010 to 116,587 _RS00535 QEN71_RS00540: QEN71_RS00540 - ABC transporter substrate-binding protein, at 116,887 to 117,891 _RS00540 Position (kb) 115 116 117Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 114.041 kb on + strandat 114.041 kb on + strandat 114.041 kb on + strandat 114.041 kb on + strandat 114.042 kb on - strandat 114.117 kb on - strandat 114.162 kb on + strand, within QEN71_RS00530at 114.162 kb on + strand, within QEN71_RS00530at 114.162 kb on + strand, within QEN71_RS00530at 114.164 kb on + strand, within QEN71_RS00530at 114.164 kb on + strand, within QEN71_RS00530at 114.164 kb on + strand, within QEN71_RS00530at 114.164 kb on + strand, within QEN71_RS00530at 114.164 kb on + strand, within QEN71_RS00530at 114.164 kb on + strand, within QEN71_RS00530at 114.164 kb on + strand, within QEN71_RS00530at 114.164 kb on + strand, within QEN71_RS00530at 114.164 kb on + strand, within QEN71_RS00530at 114.164 kb on + strand, within QEN71_RS00530at 114.164 kb on + strand, within QEN71_RS00530at 114.164 kb on + strand, within QEN71_RS00530at 114.164 kb on + strand, within QEN71_RS00530at 114.165 kb on - strand, within QEN71_RS00530at 114.165 kb on - strand, within QEN71_RS00530at 114.165 kb on - strand, within QEN71_RS00530at 114.165 kb on - strand, within QEN71_RS00530at 114.165 kb on - strand, within QEN71_RS00530at 114.165 kb on - strand, within QEN71_RS00530at 114.165 kb on - strand, within QEN71_RS00530at 114.317 kb on + strand, within QEN71_RS00530at 114.318 kb on - strand, within QEN71_RS00530at 114.318 kb on - strand, within QEN71_RS00530at 114.318 kb on - strand, within QEN71_RS00530at 114.359 kb on + strand, within QEN71_RS00530at 114.395 kb on + strand, within QEN71_RS00530at 114.395 kb on + strand, within QEN71_RS00530at 114.396 kb on - strand, within QEN71_RS00530at 114.396 kb on - strand, within QEN71_RS00530at 114.846 kb on + strand, within QEN71_RS00530at 114.996 kb on + strandat 114.996 kb on + strandat 114.996 kb on + strandat 114.996 kb on + strandat 114.996 kb on + strandat 114.996 kb on + strandat 115.110 kb on + strandat 115.111 kb on - strandat 115.376 kb on + strand, within QEN71_RS00535at 115.376 kb on + strand, within QEN71_RS00535at 115.376 kb on + strand, within QEN71_RS00535at 115.376 kb on + strand, within QEN71_RS00535at 115.376 kb on + strand, within QEN71_RS00535at 115.376 kb on + strand, within QEN71_RS00535at 115.376 kb on + strand, within QEN71_RS00535at 115.593 kb on + strand, within QEN71_RS00535at 115.593 kb on + strand, within QEN71_RS00535at 115.593 kb on + strand, within QEN71_RS00535at 115.594 kb on - strand, within QEN71_RS00535at 115.594 kb on - strand, within QEN71_RS00535at 115.594 kb on - strand, within QEN71_RS00535at 115.594 kb on - strand, within QEN71_RS00535at 115.594 kb on - strand, within QEN71_RS00535at 115.995 kb on + strand, within QEN71_RS00535at 115.995 kb on + strand, within QEN71_RS00535at 115.995 kb on + strand, within QEN71_RS00535at 115.995 kb on + strand, within QEN71_RS00535at 115.995 kb on + strand, within QEN71_RS00535at 115.995 kb on + strand, within QEN71_RS00535at 115.995 kb on + strand, within QEN71_RS00535at 115.995 kb on + strand, within QEN71_RS00535at 115.996 kb on - strand, within QEN71_RS00535at 115.996 kb on - strand, within QEN71_RS00535at 116.184 kb on + strand, within QEN71_RS00535at 116.184 kb on + strand, within QEN71_RS00535at 116.185 kb on - strand, within QEN71_RS00535at 116.185 kb on - strand, within QEN71_RS00535at 116.185 kb on - strand, within QEN71_RS00535at 116.185 kb on - strand, within QEN71_RS00535at 116.185 kb on - strand, within QEN71_RS00535at 116.352 kb on + strand, within QEN71_RS00535at 116.352 kb on + strand, within QEN71_RS00535at 116.352 kb on + strand, within QEN71_RS00535at 116.352 kb on + strand, within QEN71_RS00535at 116.352 kb on + strand, within QEN71_RS00535at 116.352 kb on + strand, within QEN71_RS00535at 116.353 kb on - strand, within QEN71_RS00535at 116.353 kb on - strand, within QEN71_RS00535at 116.353 kb on - strand, within QEN71_RS00535at 116.353 kb on - strand, within QEN71_RS00535at 116.627 kb on + strandat 116.627 kb on + strandat 116.627 kb on + strandat 116.628 kb on - strandat 116.628 kb on - strandat 116.628 kb on - strandat 116.628 kb on - strandat 116.661 kb on + strandat 116.661 kb on + strandat 116.661 kb on + strandat 116.661 kb on + strandat 116.661 kb on + strandat 116.661 kb on + strandat 116.661 kb on + strandat 116.661 kb on + strandat 116.661 kb on + strandat 116.661 kb on + strandat 116.661 kb on + strandat 116.661 kb on + strandat 116.661 kb on + strandat 116.661 kb on + strandat 116.661 kb on + strandat 116.661 kb on + strandat 116.661 kb on + strandat 116.661 kb on + strandat 116.661 kb on + strandat 116.661 kb on + strandat 116.661 kb on + strandat 116.661 kb on + strandat 116.662 kb on - strandat 116.662 kb on - strandat 116.662 kb on - strandat 116.662 kb on - strandat 116.662 kb on - strandat 116.662 kb on - strandat 116.662 kb on - strandat 116.662 kb on - strandat 116.662 kb on - strandat 116.662 kb on - strandat 116.662 kb on - strandat 116.662 kb on - strandat 116.673 kb on + strandat 116.673 kb on + strandat 116.673 kb on + strandat 116.674 kb on - strandat 116.674 kb on - strandat 116.674 kb on - strandat 116.674 kb on - strandat 116.674 kb on - strandat 116.674 kb on - strandat 116.674 kb on - strandat 116.674 kb on - strandat 116.674 kb on - strandat 116.674 kb on - strandat 116.674 kb on - strandat 116.677 kb on + strandat 116.677 kb on + strandat 116.678 kb on - strandat 116.678 kb on - strandat 116.678 kb on - strandat 116.678 kb on - strandat 116.885 kb on - strandat 116.891 kb on + strandat 116.892 kb on - strandat 116.897 kb on + strandat 116.897 kb on + strandat 116.897 kb on + strandat 116.898 kb on - strandat 116.898 kb on - strandat 116.898 kb on - strandat 116.930 kb on + strandat 116.930 kb on + strandat 116.930 kb on + strandat 116.931 kb on - strandat 117.179 kb on + strand, within QEN71_RS00540at 117.179 kb on + strand, within QEN71_RS00540at 117.180 kb on - strand, within QEN71_RS00540at 117.180 kb on - strand, within QEN71_RS00540at 117.452 kb on + strand, within QEN71_RS00540at 117.452 kb on + strand, within QEN71_RS00540at 117.452 kb on + strand, within QEN71_RS00540at 117.452 kb on + strand, within QEN71_RS00540at 117.452 kb on + strand, within QEN71_RS00540at 117.452 kb on + strand, within QEN71_RS00540at 117.452 kb on + strand, within QEN71_RS00540at 117.452 kb on + strand, within QEN71_RS00540at 117.453 kb on - strand, within QEN71_RS00540at 117.453 kb on - strand, within QEN71_RS00540at 117.453 kb on - strand, within QEN71_RS00540at 117.453 kb on - strand, within QEN71_RS00540at 117.453 kb on - strand, within QEN71_RS00540

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Per-strain Table

Position Strand Gene LocusTag Fraction 2-Deoxy-D-Ribose (C)
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114,041 + -0.6
114,041 + -0.0
114,041 + -0.8
114,041 + +0.3
114,042 - -0.5
114,117 - -1.1
114,162 + QEN71_RS00530 0.14 -0.6
114,162 + QEN71_RS00530 0.14 +0.2
114,162 + QEN71_RS00530 0.14 +0.1
114,164 + QEN71_RS00530 0.14 +0.3
114,164 + QEN71_RS00530 0.14 -1.2
114,164 + QEN71_RS00530 0.14 +1.8
114,164 + QEN71_RS00530 0.14 +0.6
114,164 + QEN71_RS00530 0.14 -0.9
114,164 + QEN71_RS00530 0.14 -0.3
114,164 + QEN71_RS00530 0.14 -1.5
114,164 + QEN71_RS00530 0.14 -1.1
114,164 + QEN71_RS00530 0.14 +1.4
114,164 + QEN71_RS00530 0.14 -0.0
114,164 + QEN71_RS00530 0.14 +0.6
114,164 + QEN71_RS00530 0.14 -0.0
114,164 + QEN71_RS00530 0.14 -0.1
114,165 - QEN71_RS00530 0.15 -0.3
114,165 - QEN71_RS00530 0.15 -0.8
114,165 - QEN71_RS00530 0.15 -0.8
114,165 - QEN71_RS00530 0.15 +1.5
114,165 - QEN71_RS00530 0.15 -0.6
114,165 - QEN71_RS00530 0.15 -1.5
114,165 - QEN71_RS00530 0.15 +0.2
114,317 + QEN71_RS00530 0.30 +0.6
114,318 - QEN71_RS00530 0.30 +0.5
114,318 - QEN71_RS00530 0.30 +0.1
114,318 - QEN71_RS00530 0.30 -0.0
114,359 + QEN71_RS00530 0.34 -0.3
114,395 + QEN71_RS00530 0.38 +0.2
114,395 + QEN71_RS00530 0.38 +1.1
114,396 - QEN71_RS00530 0.38 -0.0
114,396 - QEN71_RS00530 0.38 -0.2
114,846 + QEN71_RS00530 0.83 -0.6
114,996 + -0.7
114,996 + +0.1
114,996 + +0.9
114,996 + +1.5
114,996 + +0.0
114,996 + -2.0
115,110 + -0.1
115,111 - -0.7
115,376 + QEN71_RS00535 0.23 +0.3
115,376 + QEN71_RS00535 0.23 -0.6
115,376 + QEN71_RS00535 0.23 -0.7
115,376 + QEN71_RS00535 0.23 +0.7
115,376 + QEN71_RS00535 0.23 -0.6
115,376 + QEN71_RS00535 0.23 -1.1
115,376 + QEN71_RS00535 0.23 +1.1
115,593 + QEN71_RS00535 0.37 +0.2
115,593 + QEN71_RS00535 0.37 -0.1
115,593 + QEN71_RS00535 0.37 -0.5
115,594 - QEN71_RS00535 0.37 -0.2
115,594 - QEN71_RS00535 0.37 -1.1
115,594 - QEN71_RS00535 0.37 -0.5
115,594 - QEN71_RS00535 0.37 -0.5
115,594 - QEN71_RS00535 0.37 +0.7
115,995 + QEN71_RS00535 0.62 -2.5
115,995 + QEN71_RS00535 0.62 -0.4
115,995 + QEN71_RS00535 0.62 +0.0
115,995 + QEN71_RS00535 0.62 +0.1
115,995 + QEN71_RS00535 0.62 -0.4
115,995 + QEN71_RS00535 0.62 -0.5
115,995 + QEN71_RS00535 0.62 -2.8
115,995 + QEN71_RS00535 0.62 +0.5
115,996 - QEN71_RS00535 0.62 +1.4
115,996 - QEN71_RS00535 0.62 -0.4
116,184 + QEN71_RS00535 0.74 -0.5
116,184 + QEN71_RS00535 0.74 -1.1
116,185 - QEN71_RS00535 0.74 +0.2
116,185 - QEN71_RS00535 0.74 +0.1
116,185 - QEN71_RS00535 0.74 -1.1
116,185 - QEN71_RS00535 0.74 +0.1
116,185 - QEN71_RS00535 0.74 +1.5
116,352 + QEN71_RS00535 0.85 +0.2
116,352 + QEN71_RS00535 0.85 -0.5
116,352 + QEN71_RS00535 0.85 +0.6
116,352 + QEN71_RS00535 0.85 +0.0
116,352 + QEN71_RS00535 0.85 -0.6
116,352 + QEN71_RS00535 0.85 -1.3
116,353 - QEN71_RS00535 0.85 +0.9
116,353 - QEN71_RS00535 0.85 -0.1
116,353 - QEN71_RS00535 0.85 -0.7
116,353 - QEN71_RS00535 0.85 -0.2
116,627 + -0.1
116,627 + +1.9
116,627 + -2.3
116,628 - -0.2
116,628 - -1.2
116,628 - -0.2
116,628 - +0.8
116,661 + -0.7
116,661 + -0.6
116,661 + +0.1
116,661 + +0.0
116,661 + +0.1
116,661 + -0.9
116,661 + -0.2
116,661 + -1.2
116,661 + -0.7
116,661 + +0.2
116,661 + -1.2
116,661 + -0.9
116,661 + -0.7
116,661 + +0.4
116,661 + -1.2
116,661 + -0.8
116,661 + +1.3
116,661 + +1.4
116,661 + -0.7
116,661 + +0.2
116,661 + -0.5
116,661 + -0.4
116,662 - -0.7
116,662 - -0.4
116,662 - -1.6
116,662 - +1.4
116,662 - +0.6
116,662 - -0.9
116,662 - +0.2
116,662 - +0.0
116,662 - -0.8
116,662 - -0.4
116,662 - +0.7
116,662 - +1.1
116,673 + +0.1
116,673 + -0.7
116,673 + +1.4
116,674 - -0.4
116,674 - -0.1
116,674 - -0.2
116,674 - +0.4
116,674 - +0.5
116,674 - +0.4
116,674 - -0.2
116,674 - -0.0
116,674 - -0.4
116,674 - -0.7
116,674 - +0.1
116,677 + -0.2
116,677 + +0.1
116,678 - -0.4
116,678 - -0.2
116,678 - +0.1
116,678 - -0.5
116,885 - -1.2
116,891 + +1.1
116,892 - +0.8
116,897 + -0.7
116,897 + -0.4
116,897 + -0.1
116,898 - +0.2
116,898 - -0.7
116,898 - +0.3
116,930 + -1.4
116,930 + +0.1
116,930 + +0.5
116,931 - +0.9
117,179 + QEN71_RS00540 0.29 -2.2
117,179 + QEN71_RS00540 0.29 +0.0
117,180 - QEN71_RS00540 0.29 -0.1
117,180 - QEN71_RS00540 0.29 +0.2
117,452 + QEN71_RS00540 0.56 -1.1
117,452 + QEN71_RS00540 0.56 +0.8
117,452 + QEN71_RS00540 0.56 +0.5
117,452 + QEN71_RS00540 0.56 +0.1
117,452 + QEN71_RS00540 0.56 +1.0
117,452 + QEN71_RS00540 0.56 +0.1
117,452 + QEN71_RS00540 0.56 -0.6
117,452 + QEN71_RS00540 0.56 +1.3
117,453 - QEN71_RS00540 0.56 +0.6
117,453 - QEN71_RS00540 0.56 -0.0
117,453 - QEN71_RS00540 0.56 +0.3
117,453 - QEN71_RS00540 0.56 +0.3
117,453 - QEN71_RS00540 0.56 +1.1

Or see this region's nucleotide sequence