Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_04193 and MIT1002_04194 are separated by 201 nucleotides MIT1002_04194 and MIT1002_04195 are separated by 115 nucleotides MIT1002_04195 and MIT1002_04196 are separated by 465 nucleotides
MIT1002_04193: MIT1002_04193 - Transposase IS116/IS110/IS902 family protein, at 53,014 to 54,063
_04193
MIT1002_04194: MIT1002_04194 - hypothetical protein, at 54,265 to 54,693
_04194
MIT1002_04195: MIT1002_04195 - hypothetical protein, at 54,809 to 55,162
_04195
MIT1002_04196: MIT1002_04196 - Transposase IS116/IS110/IS902 family protein, at 55,628 to 56,674
_04196
Position (kb) 54
55 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 54.146 kb on + strand at 54.173 kb on - strand at 54.184 kb on - strand at 54.241 kb on + strand at 54.250 kb on - strand at 54.251 kb on + strand at 54.251 kb on + strand at 54.262 kb on + strand at 54.266 kb on - strand at 54.471 kb on + strand, within MIT1002_04194 at 54.472 kb on - strand, within MIT1002_04194 at 54.476 kb on + strand, within MIT1002_04194 at 54.479 kb on + strand, within MIT1002_04194 at 54.505 kb on - strand, within MIT1002_04194 at 54.605 kb on + strand, within MIT1002_04194 at 54.613 kb on - strand, within MIT1002_04194 at 54.742 kb on - strand at 54.770 kb on - strand at 54.850 kb on + strand, within MIT1002_04195 at 54.858 kb on - strand, within MIT1002_04195 at 54.950 kb on - strand, within MIT1002_04195 at 55.034 kb on + strand, within MIT1002_04195 at 55.034 kb on + strand, within MIT1002_04195 at 55.034 kb on + strand, within MIT1002_04195 at 55.034 kb on + strand, within MIT1002_04195 at 55.040 kb on + strand, within MIT1002_04195 at 55.058 kb on - strand, within MIT1002_04195 at 55.089 kb on + strand, within MIT1002_04195 at 55.146 kb on - strand at 55.151 kb on - strand at 55.165 kb on - strand at 55.170 kb on - strand at 55.172 kb on + strand at 55.224 kb on + strand at 55.224 kb on + strand at 55.224 kb on + strand at 55.224 kb on + strand at 55.232 kb on - strand at 55.232 kb on - strand at 55.232 kb on - strand at 55.258 kb on - strand at 55.276 kb on + strand at 55.284 kb on - strand at 55.294 kb on + strand at 55.356 kb on + strand at 55.364 kb on - strand at 55.409 kb on - strand at 55.416 kb on - strand at 55.432 kb on + strand at 55.440 kb on - strand at 55.440 kb on - strand at 55.448 kb on + strand at 55.483 kb on - strand at 55.491 kb on + strand at 55.527 kb on + strand at 55.529 kb on + strand at 55.533 kb on - strand at 55.582 kb on - strand at 55.612 kb on + strand at 55.625 kb on + strand at 55.625 kb on + strand at 55.652 kb on + strand at 55.652 kb on + strand at 55.652 kb on + strand at 55.652 kb on + strand at 55.652 kb on + strand at 55.658 kb on - strand at 55.660 kb on - strand at 55.660 kb on - strand at 55.660 kb on - strand at 55.660 kb on - strand at 55.660 kb on - strand at 55.660 kb on - strand at 55.660 kb on - strand at 55.660 kb on - strand at 55.660 kb on - strand at 55.660 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3 remove 54,146 + -2.9 54,173 - -1.0 54,184 - +0.5 54,241 + +0.6 54,250 - +1.2 54,251 + +1.0 54,251 + -0.1 54,262 + +0.5 54,266 - +1.1 54,471 + MIT1002_04194 0.48 +0.5 54,472 - MIT1002_04194 0.48 +0.6 54,476 + MIT1002_04194 0.49 -1.7 54,479 + MIT1002_04194 0.50 -0.5 54,505 - MIT1002_04194 0.56 +0.9 54,605 + MIT1002_04194 0.79 -0.3 54,613 - MIT1002_04194 0.81 +0.3 54,742 - +0.5 54,770 - +1.5 54,850 + MIT1002_04195 0.12 -0.4 54,858 - MIT1002_04195 0.14 +0.1 54,950 - MIT1002_04195 0.40 -1.7 55,034 + MIT1002_04195 0.64 +0.7 55,034 + MIT1002_04195 0.64 -0.1 55,034 + MIT1002_04195 0.64 -0.4 55,034 + MIT1002_04195 0.64 -0.3 55,040 + MIT1002_04195 0.65 -2.1 55,058 - MIT1002_04195 0.70 -1.1 55,089 + MIT1002_04195 0.79 -2.1 55,146 - -0.2 55,151 - +0.0 55,165 - +0.2 55,170 - +1.2 55,172 + +0.7 55,224 + -0.3 55,224 + -1.8 55,224 + +0.8 55,224 + -0.5 55,232 - -0.0 55,232 - +0.6 55,232 - -1.3 55,258 - +0.8 55,276 + +0.4 55,284 - -0.6 55,294 + -0.3 55,356 + -0.0 55,364 - -0.9 55,409 - +0.2 55,416 - +0.4 55,432 + -2.8 55,440 - +0.3 55,440 - -0.1 55,448 + +0.5 55,483 - -2.2 55,491 + -0.3 55,527 + +2.9 55,529 + +1.8 55,533 - -1.3 55,582 - -1.3 55,612 + +0.1 55,625 + +1.2 55,625 + -0.2 55,652 + +0.0 55,652 + -1.6 55,652 + +1.0 55,652 + -2.1 55,652 + +1.7 55,658 - +0.4 55,660 - +1.3 55,660 - +0.1 55,660 - +1.5 55,660 - +0.7 55,660 - +0.8 55,660 - +0.5 55,660 - +0.5 55,660 - -0.0 55,660 - -0.7 55,660 - +0.0
Or see this region's nucleotide sequence