Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04162

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_04160 and MIT1002_04161 are separated by 261 nucleotidesMIT1002_04161 and MIT1002_04162 overlap by 14 nucleotidesMIT1002_04162 and MIT1002_04163 are separated by 129 nucleotides MIT1002_04160: MIT1002_04160 - hypothetical protein, at 27,469 to 28,086 _04160 MIT1002_04161: MIT1002_04161 - hypothetical protein, at 28,348 to 28,524 _04161 MIT1002_04162: MIT1002_04162 - hypothetical protein, at 28,511 to 28,813 _04162 MIT1002_04163: MIT1002_04163 - hypothetical protein, at 28,943 to 29,203 _04163 Position (kb) 28 29Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 27.523 kb on + strandat 27.538 kb on - strand, within MIT1002_04160at 27.543 kb on - strand, within MIT1002_04160at 27.557 kb on - strand, within MIT1002_04160at 27.651 kb on + strand, within MIT1002_04160at 27.651 kb on + strand, within MIT1002_04160at 27.664 kb on + strand, within MIT1002_04160at 27.693 kb on - strand, within MIT1002_04160at 27.714 kb on - strand, within MIT1002_04160at 27.718 kb on + strand, within MIT1002_04160at 27.726 kb on - strand, within MIT1002_04160at 27.746 kb on + strand, within MIT1002_04160at 27.752 kb on + strand, within MIT1002_04160at 27.754 kb on - strand, within MIT1002_04160at 27.759 kb on - strand, within MIT1002_04160at 27.774 kb on - strand, within MIT1002_04160at 27.847 kb on - strand, within MIT1002_04160at 27.958 kb on + strand, within MIT1002_04160at 28.007 kb on - strand, within MIT1002_04160at 28.051 kb on - strandat 28.114 kb on + strandat 28.140 kb on - strandat 28.158 kb on - strandat 28.194 kb on - strandat 28.196 kb on + strandat 28.209 kb on - strandat 28.284 kb on - strandat 28.324 kb on + strandat 28.328 kb on - strandat 28.354 kb on - strandat 28.424 kb on + strand, within MIT1002_04161at 28.429 kb on - strand, within MIT1002_04161at 28.459 kb on + strand, within MIT1002_04161at 28.460 kb on + strand, within MIT1002_04161at 28.460 kb on + strand, within MIT1002_04161at 28.625 kb on + strand, within MIT1002_04162at 28.684 kb on + strand, within MIT1002_04162at 28.699 kb on + strand, within MIT1002_04162at 28.699 kb on - strand, within MIT1002_04162at 28.751 kb on + strand, within MIT1002_04162at 28.785 kb on + strandat 28.794 kb on - strandat 28.794 kb on - strandat 28.852 kb on + strandat 28.852 kb on - strandat 28.889 kb on + strandat 28.889 kb on - strandat 28.949 kb on - strandat 28.960 kb on + strandat 29.011 kb on - strand, within MIT1002_04163at 29.096 kb on + strand, within MIT1002_04163at 29.124 kb on + strand, within MIT1002_04163at 29.124 kb on + strand, within MIT1002_04163at 29.124 kb on + strand, within MIT1002_04163at 29.132 kb on - strand, within MIT1002_04163at 29.141 kb on + strand, within MIT1002_04163at 29.271 kb on + strandat 29.327 kb on + strandat 29.582 kb on + strandat 29.590 kb on - strandat 29.595 kb on + strandat 29.603 kb on - strandat 29.603 kb on - strandat 29.782 kb on + strandat 29.790 kb on + strandat 29.790 kb on - strandat 29.799 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
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27,523 + +0.6
27,538 - MIT1002_04160 0.11 -1.2
27,543 - MIT1002_04160 0.12 +1.7
27,557 - MIT1002_04160 0.14 +0.3
27,651 + MIT1002_04160 0.29 +0.8
27,651 + MIT1002_04160 0.29 +1.3
27,664 + MIT1002_04160 0.32 -0.7
27,693 - MIT1002_04160 0.36 +0.3
27,714 - MIT1002_04160 0.40 +1.1
27,718 + MIT1002_04160 0.40 -0.5
27,726 - MIT1002_04160 0.42 -0.2
27,746 + MIT1002_04160 0.45 -1.4
27,752 + MIT1002_04160 0.46 +1.7
27,754 - MIT1002_04160 0.46 +1.6
27,759 - MIT1002_04160 0.47 -1.2
27,774 - MIT1002_04160 0.49 +1.6
27,847 - MIT1002_04160 0.61 +0.0
27,958 + MIT1002_04160 0.79 +0.8
28,007 - MIT1002_04160 0.87 -0.1
28,051 - +2.4
28,114 + +0.7
28,140 - -1.8
28,158 - -0.7
28,194 - +0.5
28,196 + +0.5
28,209 - -0.3
28,284 - +0.3
28,324 + +0.2
28,328 - -0.1
28,354 - -0.6
28,424 + MIT1002_04161 0.43 +0.3
28,429 - MIT1002_04161 0.46 -0.7
28,459 + MIT1002_04161 0.63 +1.7
28,460 + MIT1002_04161 0.63 +1.3
28,460 + MIT1002_04161 0.63 +0.8
28,625 + MIT1002_04162 0.38 +2.2
28,684 + MIT1002_04162 0.57 +0.2
28,699 + MIT1002_04162 0.62 +0.7
28,699 - MIT1002_04162 0.62 +1.0
28,751 + MIT1002_04162 0.79 +0.0
28,785 + +0.4
28,794 - -0.5
28,794 - -0.5
28,852 + -0.7
28,852 - -0.0
28,889 + -3.2
28,889 - +1.1
28,949 - -0.5
28,960 + +0.5
29,011 - MIT1002_04163 0.26 +0.7
29,096 + MIT1002_04163 0.59 +0.4
29,124 + MIT1002_04163 0.69 +0.4
29,124 + MIT1002_04163 0.69 +1.5
29,124 + MIT1002_04163 0.69 +1.1
29,132 - MIT1002_04163 0.72 +0.8
29,141 + MIT1002_04163 0.76 +1.5
29,271 + +0.8
29,327 + +0.0
29,582 + +0.5
29,590 - +0.9
29,595 + -3.6
29,603 - -0.5
29,603 - +2.1
29,782 + +0.6
29,790 + +0.6
29,790 - +0.4
29,799 - -0.6

Or see this region's nucleotide sequence