Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04111

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
4,612,088	+		MIT1002_04109	0.78	-0.4
4,612,088	+		MIT1002_04109	0.78	-1.9
4,612,096	-		MIT1002_04109	0.79	-1.8
4,612,113	+		MIT1002_04109	0.82	+0.6
4,612,113	+		MIT1002_04109	0.82	-0.1
4,612,124	-		MIT1002_04109	0.84	+0.5
4,612,148	+		MIT1002_04109	0.88	-1.3
4,612,189	+				-0.3
4,612,197	-				+0.5
4,612,217	+				+1.1
4,612,265	+				-0.1
4,612,273	-				-0.2
4,612,331	+		MIT1002_04110	0.15	+0.1
4,612,331	+		MIT1002_04110	0.15	-0.8
4,612,421	+		MIT1002_04110	0.30	+0.8
4,612,442	+		MIT1002_04110	0.34	+0.6
4,612,442	+		MIT1002_04110	0.34	-1.4
4,612,479	-		MIT1002_04110	0.40	+0.4
4,612,479	-		MIT1002_04110	0.40	+0.7
4,612,481	+		MIT1002_04110	0.40	+0.4
4,612,586	+		MIT1002_04110	0.57	-0.4
4,612,601	+		MIT1002_04110	0.60	-1.4
4,612,601	+		MIT1002_04110	0.60	-1.2
4,612,609	-		MIT1002_04110	0.61	+1.4
4,612,609	-		MIT1002_04110	0.61	+0.3
4,612,626	-		MIT1002_04110	0.64	-1.8
4,612,636	-		MIT1002_04110	0.66	-0.5
4,612,662	-		MIT1002_04110	0.70	-0.3
4,612,671	+		MIT1002_04110	0.72	-0.6
4,612,759	+		MIT1002_04110	0.86	-0.4
4,612,909	+				+0.0
4,612,917	-				-1.5
4,612,926	+				+0.1
4,612,927	+				-2.6
4,612,927	+				+1.0
4,612,941	-				+0.9
4,612,952	+				+0.3
4,612,962	-				+3.1
4,613,000	-				+0.2
4,613,000	-				+0.3
4,613,088	+				-1.1
4,613,089	+				-2.0
4,613,089	+				-0.4
4,613,094	+				-0.6
4,613,097	-				+0.8
4,613,179	+		MIT1002_04111	0.18	-0.1
4,613,184	-		MIT1002_04111	0.19	+1.7
4,613,184	-		MIT1002_04111	0.19	+0.1
4,613,187	-		MIT1002_04111	0.19	-2.3
4,613,207	+		MIT1002_04111	0.21	+1.4
4,613,215	-		MIT1002_04111	0.22	+1.5
4,613,238	+		MIT1002_04111	0.24	-0.4
4,613,238	+		MIT1002_04111	0.24	-3.4
4,613,238	+		MIT1002_04111	0.24	-0.9
4,613,238	+		MIT1002_04111	0.24	-0.8
4,613,238	+		MIT1002_04111	0.24	-1.4
4,613,246	-		MIT1002_04111	0.25	+0.6
4,613,246	-		MIT1002_04111	0.25	+1.0
4,613,246	-		MIT1002_04111	0.25	-0.1
4,613,261	-		MIT1002_04111	0.27	+0.5
4,613,261	-		MIT1002_04111	0.27	+0.0
4,613,347	-		MIT1002_04111	0.36	+0.6
4,613,405	+		MIT1002_04111	0.42	+0.6
4,613,508	-		MIT1002_04111	0.52	+0.7
4,613,567	-		MIT1002_04111	0.58	+0.5
4,613,605	+		MIT1002_04111	0.62	-0.2
4,613,618	-		MIT1002_04111	0.64	+1.0
4,613,769	-		MIT1002_04111	0.79	+0.4
4,613,834	-		MIT1002_04111	0.86	+1.0
4,613,844	+		MIT1002_04111	0.87	+0.3
4,613,846	-		MIT1002_04111	0.87	+0.5
4,613,875	+				-0.3
4,613,878	-				-0.6
4,613,978	+				-0.1
4,614,056	+				-3.7
4,614,078	+				-1.7
4,614,086	-				-1.9
4,614,086	-				+0.0
4,614,086	-				-0.3
4,614,086	-				+1.0
4,614,086	-				+0.1