Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04099

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
4,596,648	+		MIT1002_04098	0.32	-0.4
4,596,659	+		MIT1002_04098	0.33	-0.7
4,596,667	-		MIT1002_04098	0.34	-0.8
4,596,685	+		MIT1002_04098	0.35	+1.8
4,596,728	-		MIT1002_04098	0.38	-0.3
4,596,744	+		MIT1002_04098	0.39	+0.6
4,596,846	-		MIT1002_04098	0.45	-0.4
4,596,846	-		MIT1002_04098	0.45	+0.5
4,596,881	+		MIT1002_04098	0.48	+0.2
4,596,881	-		MIT1002_04098	0.48	-2.6
4,596,919	+		MIT1002_04098	0.50	-1.3
4,596,973	-		MIT1002_04098	0.54	+0.5
4,596,976	-		MIT1002_04098	0.54	+2.1
4,596,976	-		MIT1002_04098	0.54	+0.3
4,596,982	-		MIT1002_04098	0.55	+0.1
4,597,000	+		MIT1002_04098	0.56	+1.1
4,597,001	-		MIT1002_04098	0.56	-1.0
4,597,002	+		MIT1002_04098	0.56	-1.2
4,597,008	-		MIT1002_04098	0.56	+1.2
4,597,008	-		MIT1002_04098	0.56	-2.7
4,597,058	+		MIT1002_04098	0.60	+1.2
4,597,131	-		MIT1002_04098	0.64	+1.0
4,597,198	-		MIT1002_04098	0.69	+0.1
4,597,212	-		MIT1002_04098	0.70	-0.7
4,597,228	+		MIT1002_04098	0.71	-1.4
4,597,236	-		MIT1002_04098	0.71	+0.8
4,597,293	-		MIT1002_04098	0.75	+0.5
4,597,314	-		MIT1002_04098	0.77	-1.0
4,597,320	+		MIT1002_04098	0.77	+3.3
4,597,320	+		MIT1002_04098	0.77	+1.0
4,597,320	+		MIT1002_04098	0.77	-1.2
4,597,328	-		MIT1002_04098	0.77	-0.3
4,597,328	-		MIT1002_04098	0.77	-1.7
4,597,488	-		MIT1002_04098	0.88	+1.4
4,597,493	+		MIT1002_04098	0.88	-1.1
4,597,539	-				+0.3
4,597,559	-				+0.3
4,597,610	-				-0.1
4,597,654	-				+0.4
4,597,654	-				-1.3
4,597,715	+				-2.0
4,597,725	-				+1.3
4,597,753	-				+0.1
4,597,876	+		MIT1002_04099	0.14	-0.9
4,597,876	+		MIT1002_04099	0.14	+0.6
4,597,876	+		MIT1002_04099	0.14	+0.6
4,597,884	-		MIT1002_04099	0.15	+1.1
4,597,884	-		MIT1002_04099	0.15	+0.0
4,597,951	-		MIT1002_04099	0.19	+0.3
4,597,999	-		MIT1002_04099	0.22	+0.8
4,598,072	+		MIT1002_04099	0.26	+1.1
4,598,085	-		MIT1002_04099	0.27	-0.7
4,598,288	+		MIT1002_04099	0.39	-0.8
4,598,294	-		MIT1002_04099	0.39	+1.8
4,598,339	+		MIT1002_04099	0.42	+0.5
4,598,339	+		MIT1002_04099	0.42	+0.1
4,598,339	+		MIT1002_04099	0.42	+0.2
4,598,347	-		MIT1002_04099	0.43	-0.2
4,598,347	-		MIT1002_04099	0.43	+0.6
4,598,374	-		MIT1002_04099	0.44	+1.7
4,598,456	+		MIT1002_04099	0.49	+0.3
4,598,478	-		MIT1002_04099	0.51	+0.2
4,598,511	+		MIT1002_04099	0.53	+0.7
4,598,511	+		MIT1002_04099	0.53	-0.3
4,598,511	+		MIT1002_04099	0.53	+1.3
4,598,519	-		MIT1002_04099	0.53	-1.0
4,598,519	-		MIT1002_04099	0.53	-1.2
4,598,528	+		MIT1002_04099	0.54	+0.6
4,598,655	+		MIT1002_04099	0.61	+0.6
4,598,762	-		MIT1002_04099	0.68	-2.6
4,598,845	+		MIT1002_04099	0.73	-0.8
4,598,863	-		MIT1002_04099	0.74	+1.0
4,598,866	-		MIT1002_04099	0.74	+0.8
4,598,870	-		MIT1002_04099	0.74	+0.6
4,599,022	+		MIT1002_04099	0.84	+1.2
4,599,037	+		MIT1002_04099	0.85	+1.4
4,599,038	-		MIT1002_04099	0.85	-3.2
4,599,045	-		MIT1002_04099	0.85	-0.5
4,599,057	+		MIT1002_04099	0.86	+0.2
4,599,085	-		MIT1002_04099	0.87	-1.8
4,599,097	-		MIT1002_04099	0.88	+0.1
4,599,136	-				-0.7
4,599,167	-				+0.9
4,599,231	+				-0.5
4,599,256	+				+0.3
4,599,419	+				+0.5
4,599,432	-				-1.7
4,599,432	-				+0.4
4,599,442	+				-1.4
4,599,442	+				+1.4
4,599,450	-				+1.4
4,599,452	+				-1.8
4,599,503	-				+1.8
4,599,505	+				-0.4
4,599,528	-				-0.4
4,599,539	-				-1.2
4,599,645	+				+0.7
4,599,648	-				+1.0
4,599,653	-				+1.2
4,599,653	-				-1.0
4,599,709	-				+0.4
4,599,709	-				+0.0
4,599,799	+		MIT1002_04100	0.12	+0.4
4,599,827	+		MIT1002_04100	0.12	-2.0
4,599,843	-		MIT1002_04100	0.13	+0.8
4,599,845	-		MIT1002_04100	0.13	-0.4
4,599,889	-		MIT1002_04100	0.15	-0.1
4,599,889	-		MIT1002_04100	0.15	-0.3
4,599,933	+		MIT1002_04100	0.16	-0.6
4,599,933	+		MIT1002_04100	0.16	-2.1
4,599,933	+		MIT1002_04100	0.16	+0.7
4,599,933	+		MIT1002_04100	0.16	+1.2
4,599,941	-		MIT1002_04100	0.16	-0.3
4,599,941	-		MIT1002_04100	0.16	+0.4
4,599,941	-		MIT1002_04100	0.16	+0.2
4,599,941	-		MIT1002_04100	0.16	-2.1
4,599,941	-		MIT1002_04100	0.16	+0.7
4,599,974	+		MIT1002_04100	0.18	+0.2
4,599,984	+		MIT1002_04100	0.18	-1.4
4,599,992	-		MIT1002_04100	0.18	+1.2
4,599,994	+		MIT1002_04100	0.18	+1.6
4,600,019	-		MIT1002_04100	0.19	-0.3
4,600,019	-		MIT1002_04100	0.19	-0.5
4,600,101	-		MIT1002_04100	0.22	+0.7
4,600,128	+		MIT1002_04100	0.23	+0.0
4,600,228	-		MIT1002_04100	0.26	+0.7
4,600,287	+		MIT1002_04100	0.28	-1.2