Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_04089 and MIT1002_04090 are separated by 1 nucleotides MIT1002_04090 and MIT1002_04091 are separated by 9 nucleotides
MIT1002_04089: MIT1002_04089 - type IV secretion/conjugal transfer ATPase, VirB4 family, at 4,586,813 to 4,588,552
_04089
MIT1002_04090: MIT1002_04090 - hypothetical protein, at 4,588,554 to 4,589,639
_04090
MIT1002_04091: MIT1002_04091 - EcoKI restriction-modification system protein HsdS, at 4,589,649 to 4,590,809
_04091
Position (kb) 4588
4589
4590 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4587.588 kb on + strand, within MIT1002_04089 at 4587.644 kb on + strand, within MIT1002_04089 at 4587.649 kb on + strand, within MIT1002_04089 at 4587.652 kb on - strand, within MIT1002_04089 at 4587.657 kb on - strand, within MIT1002_04089 at 4587.659 kb on + strand, within MIT1002_04089 at 4587.659 kb on + strand, within MIT1002_04089 at 4587.659 kb on + strand, within MIT1002_04089 at 4587.659 kb on + strand, within MIT1002_04089 at 4587.664 kb on + strand, within MIT1002_04089 at 4587.666 kb on + strand, within MIT1002_04089 at 4587.667 kb on - strand, within MIT1002_04089 at 4587.667 kb on - strand, within MIT1002_04089 at 4587.667 kb on - strand, within MIT1002_04089 at 4587.672 kb on - strand, within MIT1002_04089 at 4587.674 kb on - strand, within MIT1002_04089 at 4587.719 kb on - strand, within MIT1002_04089 at 4587.756 kb on - strand, within MIT1002_04089 at 4587.860 kb on - strand, within MIT1002_04089 at 4587.891 kb on + strand, within MIT1002_04089 at 4587.891 kb on + strand, within MIT1002_04089 at 4588.031 kb on - strand, within MIT1002_04089 at 4588.046 kb on + strand, within MIT1002_04089 at 4588.086 kb on - strand, within MIT1002_04089 at 4588.086 kb on - strand, within MIT1002_04089 at 4588.086 kb on - strand, within MIT1002_04089 at 4588.086 kb on - strand, within MIT1002_04089 at 4588.086 kb on - strand, within MIT1002_04089 at 4588.093 kb on + strand, within MIT1002_04089 at 4588.101 kb on - strand, within MIT1002_04089 at 4588.101 kb on - strand, within MIT1002_04089 at 4588.103 kb on + strand, within MIT1002_04089 at 4588.103 kb on + strand, within MIT1002_04089 at 4588.111 kb on - strand, within MIT1002_04089 at 4588.111 kb on - strand, within MIT1002_04089 at 4588.173 kb on - strand, within MIT1002_04089 at 4588.204 kb on - strand, within MIT1002_04089 at 4588.206 kb on - strand, within MIT1002_04089 at 4588.264 kb on - strand, within MIT1002_04089 at 4588.275 kb on + strand, within MIT1002_04089 at 4588.275 kb on + strand, within MIT1002_04089 at 4588.283 kb on - strand, within MIT1002_04089 at 4588.289 kb on + strand, within MIT1002_04089 at 4588.415 kb on - strand at 4588.422 kb on + strand at 4588.422 kb on + strand at 4588.430 kb on - strand at 4588.430 kb on - strand at 4588.432 kb on + strand at 4588.464 kb on + strand at 4588.464 kb on + strand at 4588.516 kb on + strand at 4588.518 kb on + strand at 4588.524 kb on - strand at 4588.524 kb on - strand at 4588.559 kb on - strand at 4588.559 kb on - strand at 4588.593 kb on + strand at 4588.640 kb on + strand at 4588.690 kb on + strand, within MIT1002_04090 at 4588.755 kb on + strand, within MIT1002_04090 at 4588.755 kb on + strand, within MIT1002_04090 at 4588.763 kb on - strand, within MIT1002_04090 at 4588.763 kb on - strand, within MIT1002_04090 at 4588.879 kb on + strand, within MIT1002_04090 at 4588.884 kb on + strand, within MIT1002_04090 at 4588.887 kb on - strand, within MIT1002_04090 at 4588.887 kb on - strand, within MIT1002_04090 at 4588.934 kb on + strand, within MIT1002_04090 at 4588.934 kb on + strand, within MIT1002_04090 at 4588.948 kb on + strand, within MIT1002_04090 at 4588.966 kb on - strand, within MIT1002_04090 at 4589.076 kb on + strand, within MIT1002_04090 at 4589.076 kb on + strand, within MIT1002_04090 at 4589.084 kb on - strand, within MIT1002_04090 at 4589.138 kb on + strand, within MIT1002_04090 at 4589.180 kb on + strand, within MIT1002_04090 at 4589.304 kb on + strand, within MIT1002_04090 at 4589.540 kb on + strand at 4589.645 kb on + strand at 4589.653 kb on - strand at 4589.674 kb on + strand at 4589.711 kb on + strand at 4589.720 kb on - strand at 4589.766 kb on - strand, within MIT1002_04091 at 4589.801 kb on + strand, within MIT1002_04091 at 4589.850 kb on - strand, within MIT1002_04091 at 4589.852 kb on + strand, within MIT1002_04091 at 4589.862 kb on + strand, within MIT1002_04091 at 4589.963 kb on + strand, within MIT1002_04091 at 4590.017 kb on - strand, within MIT1002_04091 at 4590.055 kb on + strand, within MIT1002_04091 at 4590.062 kb on - strand, within MIT1002_04091 at 4590.062 kb on - strand, within MIT1002_04091 at 4590.108 kb on - strand, within MIT1002_04091 at 4590.109 kb on - strand, within MIT1002_04091 at 4590.115 kb on - strand, within MIT1002_04091 at 4590.117 kb on + strand, within MIT1002_04091 at 4590.124 kb on + strand, within MIT1002_04091 at 4590.125 kb on - strand, within MIT1002_04091 at 4590.174 kb on - strand, within MIT1002_04091 at 4590.174 kb on - strand, within MIT1002_04091 at 4590.193 kb on - strand, within MIT1002_04091 at 4590.278 kb on + strand, within MIT1002_04091 at 4590.295 kb on + strand, within MIT1002_04091 at 4590.344 kb on + strand, within MIT1002_04091 at 4590.344 kb on + strand, within MIT1002_04091 at 4590.352 kb on - strand, within MIT1002_04091 at 4590.354 kb on + strand, within MIT1002_04091 at 4590.361 kb on + strand, within MIT1002_04091 at 4590.375 kb on - strand, within MIT1002_04091 at 4590.375 kb on - strand, within MIT1002_04091 at 4590.412 kb on - strand, within MIT1002_04091 at 4590.464 kb on + strand, within MIT1002_04091 at 4590.542 kb on + strand, within MIT1002_04091 at 4590.545 kb on + strand, within MIT1002_04091 at 4590.547 kb on + strand, within MIT1002_04091 at 4590.550 kb on - strand, within MIT1002_04091 at 4590.550 kb on - strand, within MIT1002_04091 at 4590.560 kb on - strand, within MIT1002_04091 at 4590.560 kb on - strand, within MIT1002_04091 at 4590.564 kb on + strand, within MIT1002_04091 at 4590.607 kb on + strand, within MIT1002_04091
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3 remove 4,587,588 + MIT1002_04089 0.45 -0.5 4,587,644 + MIT1002_04089 0.48 +1.9 4,587,649 + MIT1002_04089 0.48 +0.0 4,587,652 - MIT1002_04089 0.48 -1.9 4,587,657 - MIT1002_04089 0.49 -2.7 4,587,659 + MIT1002_04089 0.49 +0.5 4,587,659 + MIT1002_04089 0.49 +1.1 4,587,659 + MIT1002_04089 0.49 -0.1 4,587,659 + MIT1002_04089 0.49 +0.5 4,587,664 + MIT1002_04089 0.49 +0.4 4,587,666 + MIT1002_04089 0.49 -0.1 4,587,667 - MIT1002_04089 0.49 -0.4 4,587,667 - MIT1002_04089 0.49 +1.7 4,587,667 - MIT1002_04089 0.49 +0.4 4,587,672 - MIT1002_04089 0.49 -0.3 4,587,674 - MIT1002_04089 0.49 +1.1 4,587,719 - MIT1002_04089 0.52 +1.1 4,587,756 - MIT1002_04089 0.54 +0.4 4,587,860 - MIT1002_04089 0.60 -1.6 4,587,891 + MIT1002_04089 0.62 -0.7 4,587,891 + MIT1002_04089 0.62 +0.4 4,588,031 - MIT1002_04089 0.70 -0.2 4,588,046 + MIT1002_04089 0.71 -0.7 4,588,086 - MIT1002_04089 0.73 +0.1 4,588,086 - MIT1002_04089 0.73 +0.9 4,588,086 - MIT1002_04089 0.73 +0.0 4,588,086 - MIT1002_04089 0.73 +0.2 4,588,086 - MIT1002_04089 0.73 +0.2 4,588,093 + MIT1002_04089 0.74 -0.1 4,588,101 - MIT1002_04089 0.74 +0.3 4,588,101 - MIT1002_04089 0.74 +0.4 4,588,103 + MIT1002_04089 0.74 -1.2 4,588,103 + MIT1002_04089 0.74 +0.2 4,588,111 - MIT1002_04089 0.75 -2.5 4,588,111 - MIT1002_04089 0.75 +0.5 4,588,173 - MIT1002_04089 0.78 +1.5 4,588,204 - MIT1002_04089 0.80 -1.2 4,588,206 - MIT1002_04089 0.80 -0.2 4,588,264 - MIT1002_04089 0.83 +1.0 4,588,275 + MIT1002_04089 0.84 +0.3 4,588,275 + MIT1002_04089 0.84 -0.6 4,588,283 - MIT1002_04089 0.84 -0.4 4,588,289 + MIT1002_04089 0.85 +1.4 4,588,415 - +1.2 4,588,422 + -3.0 4,588,422 + +0.2 4,588,430 - -2.5 4,588,430 - -1.4 4,588,432 + +0.4 4,588,464 + -0.8 4,588,464 + +2.3 4,588,516 + -0.8 4,588,518 + +0.4 4,588,524 - -2.1 4,588,524 - +0.2 4,588,559 - +0.9 4,588,559 - +1.1 4,588,593 + +0.1 4,588,640 + -1.2 4,588,690 + MIT1002_04090 0.13 -1.8 4,588,755 + MIT1002_04090 0.19 +2.0 4,588,755 + MIT1002_04090 0.19 -0.7 4,588,763 - MIT1002_04090 0.19 -0.7 4,588,763 - MIT1002_04090 0.19 -1.6 4,588,879 + MIT1002_04090 0.30 +3.3 4,588,884 + MIT1002_04090 0.30 +0.6 4,588,887 - MIT1002_04090 0.31 +1.6 4,588,887 - MIT1002_04090 0.31 +0.6 4,588,934 + MIT1002_04090 0.35 +1.5 4,588,934 + MIT1002_04090 0.35 +0.5 4,588,948 + MIT1002_04090 0.36 -0.2 4,588,966 - MIT1002_04090 0.38 -0.1 4,589,076 + MIT1002_04090 0.48 +0.2 4,589,076 + MIT1002_04090 0.48 +2.5 4,589,084 - MIT1002_04090 0.49 +1.8 4,589,138 + MIT1002_04090 0.54 +0.8 4,589,180 + MIT1002_04090 0.58 +0.8 4,589,304 + MIT1002_04090 0.69 -1.0 4,589,540 + +1.6 4,589,645 + -0.5 4,589,653 - +0.3 4,589,674 + -3.1 4,589,711 + -1.4 4,589,720 - +0.9 4,589,766 - MIT1002_04091 0.10 -2.7 4,589,801 + MIT1002_04091 0.13 +1.9 4,589,850 - MIT1002_04091 0.17 -0.0 4,589,852 + MIT1002_04091 0.17 +0.9 4,589,862 + MIT1002_04091 0.18 -0.6 4,589,963 + MIT1002_04091 0.27 -0.5 4,590,017 - MIT1002_04091 0.32 +1.1 4,590,055 + MIT1002_04091 0.35 -1.1 4,590,062 - MIT1002_04091 0.36 -1.5 4,590,062 - MIT1002_04091 0.36 +1.9 4,590,108 - MIT1002_04091 0.40 +0.0 4,590,109 - MIT1002_04091 0.40 +1.4 4,590,115 - MIT1002_04091 0.40 -2.8 4,590,117 + MIT1002_04091 0.40 -1.4 4,590,124 + MIT1002_04091 0.41 +0.9 4,590,125 - MIT1002_04091 0.41 -2.3 4,590,174 - MIT1002_04091 0.45 +0.5 4,590,174 - MIT1002_04091 0.45 -0.7 4,590,193 - MIT1002_04091 0.47 +1.0 4,590,278 + MIT1002_04091 0.54 -0.3 4,590,295 + MIT1002_04091 0.56 +0.7 4,590,344 + MIT1002_04091 0.60 -0.4 4,590,344 + MIT1002_04091 0.60 -1.0 4,590,352 - MIT1002_04091 0.61 -0.3 4,590,354 + MIT1002_04091 0.61 -0.6 4,590,361 + MIT1002_04091 0.61 -0.6 4,590,375 - MIT1002_04091 0.63 +0.7 4,590,375 - MIT1002_04091 0.63 -2.5 4,590,412 - MIT1002_04091 0.66 +2.1 4,590,464 + MIT1002_04091 0.70 +0.6 4,590,542 + MIT1002_04091 0.77 -0.6 4,590,545 + MIT1002_04091 0.77 +2.2 4,590,547 + MIT1002_04091 0.77 +0.8 4,590,550 - MIT1002_04091 0.78 +2.0 4,590,550 - MIT1002_04091 0.78 +0.5 4,590,560 - MIT1002_04091 0.78 +0.3 4,590,560 - MIT1002_04091 0.78 +0.5 4,590,564 + MIT1002_04091 0.79 -0.2 4,590,607 + MIT1002_04091 0.83 +1.3
Or see this region's nucleotide sequence