Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04077

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
4,572,946	+		MIT1002_04074	0.19	-1.9
4,572,951	+		MIT1002_04074	0.19	-1.5
4,572,953	-		MIT1002_04074	0.20	+0.2
4,572,953	-		MIT1002_04074	0.20	-0.2
4,572,953	-		MIT1002_04074	0.20	-0.6
4,572,955	-		MIT1002_04074	0.20	-0.4
4,572,955	-		MIT1002_04074	0.20	-0.3
4,572,955	-		MIT1002_04074	0.20	+0.5
4,572,955	-		MIT1002_04074	0.20	-0.0
4,572,955	-		MIT1002_04074	0.20	+1.1
4,572,955	-		MIT1002_04074	0.20	+0.0
4,572,955	-		MIT1002_04074	0.20	+1.8
4,572,977	-		MIT1002_04074	0.23	-0.5
4,573,015	+		MIT1002_04074	0.29	+0.4
4,573,052	-		MIT1002_04074	0.35	-1.0
4,573,062	-		MIT1002_04074	0.37	+1.5
4,573,067	-		MIT1002_04074	0.38	-3.5
4,573,075	-		MIT1002_04074	0.39	-0.4
4,573,075	-		MIT1002_04074	0.39	+0.5
4,573,083	+		MIT1002_04074	0.40	-1.0
4,573,083	+		MIT1002_04074	0.40	+0.4
4,573,090	+		MIT1002_04074	0.41	+0.4
4,573,168	+		MIT1002_04074	0.53	+0.3
4,573,178	+		MIT1002_04074	0.55	+1.1
4,573,186	-		MIT1002_04074	0.56	-0.8
4,573,196	+		MIT1002_04074	0.58	-2.5
4,573,196	+		MIT1002_04074	0.58	+0.8
4,573,196	+		MIT1002_04074	0.58	+0.0
4,573,197	-		MIT1002_04074	0.58	-2.0
4,573,201	+		MIT1002_04074	0.59	-2.7
4,573,204	-		MIT1002_04074	0.59	-1.1
4,573,204	-		MIT1002_04074	0.59	-0.1
4,573,204	-		MIT1002_04074	0.59	-0.8
4,573,204	-		MIT1002_04074	0.59	+1.2
4,573,204	-		MIT1002_04074	0.59	+0.4
4,573,204	-		MIT1002_04074	0.59	-1.0
4,573,204	-		MIT1002_04074	0.59	+1.7
4,573,241	-		MIT1002_04074	0.65	-4.0
4,573,246	-		MIT1002_04074	0.66	-5.8
4,573,259	-		MIT1002_04074	0.68	-1.0
4,573,267	-		MIT1002_04074	0.69	-0.1
4,573,267	-		MIT1002_04074	0.69	-0.4
4,573,272	-		MIT1002_04074	0.70	+1.6
4,573,273	+		MIT1002_04074	0.70	+0.7
4,573,273	+		MIT1002_04074	0.70	+0.2
4,573,273	+		MIT1002_04074	0.70	-1.1
4,573,281	-		MIT1002_04074	0.71	-0.2
4,573,281	-		MIT1002_04074	0.71	-0.2
4,573,315	-		MIT1002_04074	0.77	-1.1
4,573,327	-		MIT1002_04074	0.78	-1.9
4,573,328	-		MIT1002_04074	0.79	+0.5
4,573,328	-		MIT1002_04074	0.79	+0.4
4,573,329	-		MIT1002_04074	0.79	+0.7
4,573,347	-		MIT1002_04074	0.82	-1.4
4,573,347	-		MIT1002_04074	0.82	-0.7
4,573,349	+		MIT1002_04074	0.82	+1.3
4,573,349	+		MIT1002_04074	0.82	-0.2
4,573,351	+		MIT1002_04074	0.82	-0.9
4,573,357	-		MIT1002_04074	0.83	+0.0
4,573,357	-		MIT1002_04074	0.83	-0.4
4,573,362	+		MIT1002_04074	0.84	+0.0
4,573,367	+		MIT1002_04074	0.85	+0.3
4,573,367	+		MIT1002_04074	0.85	+0.5
4,573,370	-		MIT1002_04074	0.85	-2.6
4,573,377	+		MIT1002_04074	0.86	-0.0
4,573,382	+		MIT1002_04074	0.87	+0.8
4,573,430	+				+0.1
4,573,457	+				-0.6
4,573,457	+				-1.0
4,573,457	+				+0.8
4,573,508	+		MIT1002_04075	0.28	+1.2
4,573,508	+		MIT1002_04075	0.28	+0.8
4,573,516	-		MIT1002_04075	0.31	+0.6
4,573,517	-		MIT1002_04075	0.32	+0.5
4,573,527	-		MIT1002_04075	0.36	-0.2
4,573,527	-		MIT1002_04075	0.36	+2.0
4,573,546	+		MIT1002_04075	0.43	-0.4
4,573,585	+		MIT1002_04075	0.59	+0.3
4,573,715	-		MIT1002_04076	0.15	+1.5
4,573,730	+		MIT1002_04076	0.20	-1.2
4,573,730	+		MIT1002_04076	0.20	-0.7
4,573,766	+		MIT1002_04076	0.34	+0.1
4,573,766	+		MIT1002_04076	0.34	-0.5
4,573,766	+		MIT1002_04076	0.34	-1.5
4,573,767	-		MIT1002_04076	0.34	+1.9
4,573,774	-		MIT1002_04076	0.37	-3.3
4,573,774	-		MIT1002_04076	0.37	+0.1
4,573,774	-		MIT1002_04076	0.37	-0.2
4,573,822	+		MIT1002_04076	0.56	-2.0
4,573,823	-		MIT1002_04076	0.56	+0.2
4,573,827	+		MIT1002_04076	0.57	-0.1
4,573,828	-		MIT1002_04076	0.58	+0.0
4,573,830	-		MIT1002_04076	0.59	+1.0
4,573,830	-		MIT1002_04076	0.59	+1.3
4,573,835	-		MIT1002_04076	0.61	-0.5
4,573,835	-		MIT1002_04076	0.61	-2.3
4,573,835	-		MIT1002_04076	0.61	-2.4
4,573,835	-		MIT1002_04076	0.61	-1.7
4,573,840	-		MIT1002_04076	0.62	-1.8
4,573,841	+		MIT1002_04076	0.63	-2.1
4,573,841	+		MIT1002_04076	0.63	-2.2
4,573,841	+		MIT1002_04076	0.63	+1.4
4,573,841	+		MIT1002_04076	0.63	-0.2
4,573,866	+		MIT1002_04076	0.72	+1.8
4,573,874	-		MIT1002_04076	0.75	+0.2
4,574,108	+				+0.5
4,574,110	-		MIT1002_04077	0.10	+0.6
4,574,113	+		MIT1002_04077	0.10	+1.5
4,574,113	+		MIT1002_04077	0.10	-0.6
4,574,113	+		MIT1002_04077	0.10	-0.1
4,574,113	+		MIT1002_04077	0.10	-2.4
4,574,113	+		MIT1002_04077	0.10	-0.3
4,574,113	+		MIT1002_04077	0.10	+0.9
4,574,113	+		MIT1002_04077	0.10	+1.0
4,574,113	+		MIT1002_04077	0.10	-0.5
4,574,121	-		MIT1002_04077	0.11	+0.4
4,574,121	-		MIT1002_04077	0.11	+0.8
4,574,121	-		MIT1002_04077	0.11	-0.8
4,574,121	-		MIT1002_04077	0.11	-3.2
4,574,149	-		MIT1002_04077	0.12	+0.3
4,574,212	+		MIT1002_04077	0.16	+1.3
4,574,272	-		MIT1002_04077	0.19	+0.1
4,574,330	-		MIT1002_04077	0.23	+0.3
4,574,381	-		MIT1002_04077	0.26	-0.1
4,574,469	+		MIT1002_04077	0.31	+0.1
4,574,469	+		MIT1002_04077	0.31	+2.2
4,574,501	-		MIT1002_04077	0.33	-0.3
4,574,501	-		MIT1002_04077	0.33	+1.0
4,574,552	-		MIT1002_04077	0.36	+2.9
4,574,554	-		MIT1002_04077	0.36	-0.4
4,574,653	-		MIT1002_04077	0.42	+0.1
4,574,654	-		MIT1002_04077	0.42	+1.6
4,574,665	+		MIT1002_04077	0.42	-0.2
4,574,665	+		MIT1002_04077	0.42	+1.5
4,574,671	-		MIT1002_04077	0.43	+1.2
4,574,724	-		MIT1002_04077	0.46	-0.5
4,574,724	-		MIT1002_04077	0.46	+0.7
4,574,726	-		MIT1002_04077	0.46	-0.1
4,574,749	-		MIT1002_04077	0.47	+0.4
4,574,749	-		MIT1002_04077	0.47	-0.5
4,574,754	-		MIT1002_04077	0.47	+0.9
4,574,760	+		MIT1002_04077	0.48	+0.6
4,574,760	+		MIT1002_04077	0.48	-0.4
4,574,768	-		MIT1002_04077	0.48	+0.7
4,574,785	+		MIT1002_04077	0.49	-0.1
4,574,785	+		MIT1002_04077	0.49	+1.3
4,574,793	-		MIT1002_04077	0.50	-0.9
4,574,880	+		MIT1002_04077	0.55	+0.5
4,574,880	+		MIT1002_04077	0.55	-1.4
4,574,888	-		MIT1002_04077	0.55	+1.0
4,574,936	-		MIT1002_04077	0.58	-0.8
4,574,938	+		MIT1002_04077	0.58	-0.1
4,574,946	-		MIT1002_04077	0.58	+0.4
4,575,030	+		MIT1002_04077	0.63	-1.3
4,575,039	-		MIT1002_04077	0.64	-1.2
4,575,057	+		MIT1002_04077	0.65	+0.5
4,575,145	-		MIT1002_04077	0.70	-0.7
4,575,175	+		MIT1002_04077	0.72	+0.4
4,575,182	+		MIT1002_04077	0.72	+0.5
4,575,225	+		MIT1002_04077	0.75	-0.7
4,575,291	+		MIT1002_04077	0.78	+0.1
4,575,564	-				-2.2
4,575,630	+				-0.2
4,575,631	+				+0.9
4,575,638	-				+0.3
4,575,639	-				-1.9
4,575,639	-				+1.0
4,575,639	-				-0.8
4,575,677	-				-0.7
4,575,687	+				+0.0
4,575,695	-				-2.2
4,575,709	+				+0.8
4,575,709	+				-1.4
4,575,709	+				+0.2
4,575,709	+				-1.0
4,575,709	+				+0.6
4,575,709	+				+0.3
4,575,717	-				-0.6
4,575,717	-				+1.6
4,575,717	-				+1.6
4,575,717	-				+0.8
4,575,722	+				+1.9
4,575,807	+				-0.0
4,575,865	+				-1.0
4,575,873	-				-0.3
4,575,969	+		MIT1002_04078	0.62	+0.1
4,576,017	-				+1.5
4,576,024	+		MIT1002_04079	0.12	+1.6
4,576,077	+		MIT1002_04079	0.56	-2.4
4,576,082	+		MIT1002_04079	0.60	-1.3
4,576,114	+		MIT1002_04079	0.87	-0.8
4,576,114	+		MIT1002_04079	0.87	+0.1
4,576,114	+		MIT1002_04079	0.87	-1.6
4,576,123	-				+0.6
4,576,233	+		MIT1002_04080	0.23	-0.5
4,576,257	-		MIT1002_04080	0.29	+1.7
4,576,413	+		MIT1002_04080	0.70	-2.6
4,576,435	-		MIT1002_04080	0.76	+2.3
4,576,441	-		MIT1002_04080	0.78	-3.0
4,576,491	+				-0.2
4,576,545	-				+0.5
4,576,574	+				-0.2
4,576,618	+		MIT1002_04081	0.21	+0.5
4,576,619	-		MIT1002_04081	0.22	+1.5
4,576,620	+		MIT1002_04081	0.22	-0.5
4,576,620	-		MIT1002_04081	0.22	-0.9
4,576,629	+		MIT1002_04081	0.26	-0.4
4,576,637	-		MIT1002_04081	0.30	-0.9