Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_04042 and MIT1002_04043 are separated by 208 nucleotides MIT1002_04043 and MIT1002_04044 are separated by 31 nucleotides
MIT1002_04042: MIT1002_04042 - putative membrane protein, at 4,537,244 to 4,537,861
_04042
MIT1002_04043: MIT1002_04043 - Competence protein ComM, at 4,538,070 to 4,539,584
_04043
MIT1002_04044: MIT1002_04044 - HTH-type transcriptional regulator GltC, at 4,539,616 to 4,540,494
_04044
Position (kb) 4538
4539
4540 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2 at 4537.095 kb on + strand at 4537.141 kb on - strand at 4537.156 kb on - strand at 4537.278 kb on + strand at 4537.286 kb on - strand at 4537.286 kb on - strand at 4537.288 kb on - strand at 4537.307 kb on + strand, within MIT1002_04042 at 4537.377 kb on + strand, within MIT1002_04042 at 4537.385 kb on - strand, within MIT1002_04042 at 4537.385 kb on - strand, within MIT1002_04042 at 4537.385 kb on - strand, within MIT1002_04042 at 4537.404 kb on - strand, within MIT1002_04042 at 4537.422 kb on - strand, within MIT1002_04042 at 4537.469 kb on - strand, within MIT1002_04042 at 4537.493 kb on - strand, within MIT1002_04042 at 4537.544 kb on - strand, within MIT1002_04042 at 4537.546 kb on + strand, within MIT1002_04042 at 4537.546 kb on + strand, within MIT1002_04042 at 4537.546 kb on + strand, within MIT1002_04042 at 4537.554 kb on - strand, within MIT1002_04042 at 4537.554 kb on - strand, within MIT1002_04042 at 4537.565 kb on + strand, within MIT1002_04042 at 4537.597 kb on - strand, within MIT1002_04042 at 4537.621 kb on - strand, within MIT1002_04042 at 4537.705 kb on - strand, within MIT1002_04042 at 4537.715 kb on - strand, within MIT1002_04042 at 4537.765 kb on + strand, within MIT1002_04042 at 4537.798 kb on + strand, within MIT1002_04042 at 4537.798 kb on + strand, within MIT1002_04042 at 4537.806 kb on - strand at 4537.806 kb on - strand at 4537.806 kb on - strand at 4537.806 kb on - strand at 4537.824 kb on + strand at 4537.829 kb on - strand at 4537.864 kb on - strand at 4537.885 kb on + strand at 4537.918 kb on + strand at 4537.926 kb on - strand at 4537.926 kb on - strand at 4537.926 kb on - strand at 4537.982 kb on + strand at 4537.990 kb on - strand at 4538.003 kb on + strand at 4538.069 kb on - strand at 4538.100 kb on + strand at 4538.100 kb on + strand at 4538.100 kb on + strand at 4538.100 kb on - strand at 4538.116 kb on + strand at 4538.116 kb on + strand at 4538.131 kb on - strand at 4538.136 kb on - strand at 4538.136 kb on - strand at 4538.171 kb on + strand at 4538.184 kb on - strand at 4538.189 kb on - strand at 4538.199 kb on - strand at 4538.214 kb on + strand at 4538.228 kb on + strand, within MIT1002_04043 at 4538.239 kb on + strand, within MIT1002_04043 at 4538.316 kb on - strand, within MIT1002_04043 at 4538.316 kb on - strand, within MIT1002_04043 at 4538.351 kb on - strand, within MIT1002_04043 at 4538.476 kb on - strand, within MIT1002_04043 at 4538.476 kb on - strand, within MIT1002_04043 at 4538.477 kb on + strand, within MIT1002_04043 at 4538.506 kb on - strand, within MIT1002_04043 at 4538.506 kb on - strand, within MIT1002_04043 at 4538.528 kb on + strand, within MIT1002_04043 at 4538.552 kb on - strand, within MIT1002_04043 at 4538.565 kb on - strand, within MIT1002_04043 at 4538.629 kb on - strand, within MIT1002_04043 at 4538.631 kb on + strand, within MIT1002_04043 at 4538.736 kb on + strand, within MIT1002_04043 at 4538.736 kb on + strand, within MIT1002_04043 at 4538.744 kb on - strand, within MIT1002_04043 at 4538.777 kb on - strand, within MIT1002_04043 at 4538.811 kb on + strand, within MIT1002_04043 at 4538.819 kb on - strand, within MIT1002_04043 at 4538.878 kb on - strand, within MIT1002_04043 at 4538.885 kb on + strand, within MIT1002_04043 at 4538.893 kb on + strand, within MIT1002_04043 at 4538.916 kb on + strand, within MIT1002_04043 at 4538.981 kb on + strand, within MIT1002_04043 at 4539.023 kb on + strand, within MIT1002_04043 at 4539.066 kb on + strand, within MIT1002_04043 at 4539.072 kb on - strand, within MIT1002_04043 at 4539.114 kb on - strand, within MIT1002_04043 at 4539.174 kb on - strand, within MIT1002_04043 at 4539.296 kb on + strand, within MIT1002_04043 at 4539.296 kb on + strand, within MIT1002_04043 at 4539.335 kb on - strand, within MIT1002_04043 at 4539.338 kb on + strand, within MIT1002_04043 at 4539.358 kb on + strand, within MIT1002_04043 at 4539.366 kb on - strand, within MIT1002_04043 at 4539.396 kb on + strand, within MIT1002_04043 at 4539.426 kb on - strand, within MIT1002_04043 at 4539.497 kb on + strand at 4539.539 kb on - strand at 4539.541 kb on + strand at 4539.640 kb on - strand at 4539.650 kb on - strand at 4539.650 kb on - strand at 4539.650 kb on - strand at 4539.650 kb on - strand at 4539.650 kb on - strand at 4539.688 kb on + strand at 4539.696 kb on - strand at 4539.696 kb on - strand at 4539.696 kb on - strand at 4539.696 kb on - strand at 4539.696 kb on - strand at 4539.740 kb on + strand, within MIT1002_04044 at 4539.745 kb on + strand, within MIT1002_04044 at 4539.749 kb on + strand, within MIT1002_04044 at 4539.801 kb on + strand, within MIT1002_04044 at 4539.822 kb on - strand, within MIT1002_04044 at 4539.849 kb on + strand, within MIT1002_04044 at 4539.875 kb on + strand, within MIT1002_04044 at 4539.930 kb on - strand, within MIT1002_04044 at 4539.949 kb on + strand, within MIT1002_04044 at 4539.987 kb on + strand, within MIT1002_04044 at 4539.987 kb on + strand, within MIT1002_04044 at 4539.996 kb on - strand, within MIT1002_04044 at 4540.043 kb on - strand, within MIT1002_04044 at 4540.098 kb on + strand, within MIT1002_04044 at 4540.106 kb on - strand, within MIT1002_04044 at 4540.107 kb on - strand, within MIT1002_04044 at 4540.141 kb on - strand, within MIT1002_04044 at 4540.145 kb on + strand, within MIT1002_04044 at 4540.145 kb on + strand, within MIT1002_04044 at 4540.153 kb on - strand, within MIT1002_04044 at 4540.163 kb on - strand, within MIT1002_04044 at 4540.177 kb on + strand, within MIT1002_04044 at 4540.177 kb on + strand, within MIT1002_04044 at 4540.185 kb on - strand, within MIT1002_04044 at 4540.250 kb on + strand, within MIT1002_04044 at 4540.250 kb on + strand, within MIT1002_04044 at 4540.263 kb on + strand, within MIT1002_04044 at 4540.308 kb on - strand, within MIT1002_04044 at 4540.318 kb on - strand, within MIT1002_04044 at 4540.318 kb on - strand, within MIT1002_04044 at 4540.340 kb on + strand, within MIT1002_04044 at 4540.347 kb on + strand, within MIT1002_04044 at 4540.348 kb on - strand, within MIT1002_04044 at 4540.348 kb on - strand, within MIT1002_04044 at 4540.348 kb on - strand, within MIT1002_04044 at 4540.350 kb on + strand, within MIT1002_04044 at 4540.350 kb on + strand, within MIT1002_04044 at 4540.350 kb on + strand, within MIT1002_04044 at 4540.350 kb on + strand, within MIT1002_04044 at 4540.350 kb on + strand, within MIT1002_04044 at 4540.355 kb on + strand, within MIT1002_04044 at 4540.358 kb on - strand, within MIT1002_04044 at 4540.358 kb on - strand, within MIT1002_04044 at 4540.358 kb on - strand, within MIT1002_04044 at 4540.358 kb on - strand, within MIT1002_04044 at 4540.358 kb on - strand, within MIT1002_04044 at 4540.365 kb on - strand, within MIT1002_04044 at 4540.365 kb on - strand, within MIT1002_04044 at 4540.383 kb on - strand, within MIT1002_04044 at 4540.390 kb on + strand, within MIT1002_04044 at 4540.390 kb on + strand, within MIT1002_04044 at 4540.398 kb on - strand, within MIT1002_04044 at 4540.398 kb on - strand, within MIT1002_04044 at 4540.398 kb on - strand, within MIT1002_04044 at 4540.398 kb on - strand, within MIT1002_04044 at 4540.418 kb on - strand at 4540.443 kb on + strand at 4540.453 kb on - strand at 4540.467 kb on + strand at 4540.467 kb on + strand at 4540.467 kb on + strand at 4540.467 kb on + strand at 4540.467 kb on + strand at 4540.467 kb on + strand at 4540.467 kb on + strand at 4540.467 kb on + strand at 4540.467 kb on + strand at 4540.473 kb on - strand at 4540.475 kb on - strand at 4540.475 kb on - strand at 4540.475 kb on - strand at 4540.475 kb on - strand at 4540.475 kb on - strand at 4540.475 kb on - strand at 4540.475 kb on - strand at 4540.475 kb on - strand at 4540.475 kb on - strand at 4540.475 kb on - strand at 4540.573 kb on + strand at 4540.578 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3 remove 4,537,095 + -3.8 4,537,141 - +0.0 4,537,156 - -1.4 4,537,278 + -2.1 4,537,286 - +0.3 4,537,286 - +0.2 4,537,288 - +0.6 4,537,307 + MIT1002_04042 0.10 -0.3 4,537,377 + MIT1002_04042 0.22 +0.8 4,537,385 - MIT1002_04042 0.23 +0.2 4,537,385 - MIT1002_04042 0.23 +0.5 4,537,385 - MIT1002_04042 0.23 +0.0 4,537,404 - MIT1002_04042 0.26 +1.2 4,537,422 - MIT1002_04042 0.29 -1.4 4,537,469 - MIT1002_04042 0.36 +2.2 4,537,493 - MIT1002_04042 0.40 -2.2 4,537,544 - MIT1002_04042 0.49 +0.8 4,537,546 + MIT1002_04042 0.49 -0.4 4,537,546 + MIT1002_04042 0.49 -2.3 4,537,546 + MIT1002_04042 0.49 +0.2 4,537,554 - MIT1002_04042 0.50 -0.4 4,537,554 - MIT1002_04042 0.50 +1.4 4,537,565 + MIT1002_04042 0.52 +2.2 4,537,597 - MIT1002_04042 0.57 -2.9 4,537,621 - MIT1002_04042 0.61 -0.1 4,537,705 - MIT1002_04042 0.75 +0.1 4,537,715 - MIT1002_04042 0.76 -0.3 4,537,765 + MIT1002_04042 0.84 +0.7 4,537,798 + MIT1002_04042 0.90 +1.4 4,537,798 + MIT1002_04042 0.90 -2.4 4,537,806 - +0.9 4,537,806 - +0.2 4,537,806 - -3.9 4,537,806 - +1.6 4,537,824 + +0.9 4,537,829 - -0.8 4,537,864 - +0.2 4,537,885 + +0.3 4,537,918 + -0.4 4,537,926 - +1.0 4,537,926 - +1.5 4,537,926 - -1.4 4,537,982 + +0.9 4,537,990 - -1.2 4,538,003 + +0.4 4,538,069 - +2.2 4,538,100 + -0.8 4,538,100 + -0.1 4,538,100 + +0.8 4,538,100 - +0.8 4,538,116 + -0.8 4,538,116 + +1.5 4,538,131 - -2.0 4,538,136 - -2.5 4,538,136 - -1.5 4,538,171 + -1.3 4,538,184 - +0.2 4,538,189 - +1.2 4,538,199 - +0.8 4,538,214 + -3.1 4,538,228 + MIT1002_04043 0.10 +0.3 4,538,239 + MIT1002_04043 0.11 -0.4 4,538,316 - MIT1002_04043 0.16 -0.8 4,538,316 - MIT1002_04043 0.16 -2.2 4,538,351 - MIT1002_04043 0.19 +1.6 4,538,476 - MIT1002_04043 0.27 -1.2 4,538,476 - MIT1002_04043 0.27 +0.5 4,538,477 + MIT1002_04043 0.27 -0.0 4,538,506 - MIT1002_04043 0.29 +0.6 4,538,506 - MIT1002_04043 0.29 +0.6 4,538,528 + MIT1002_04043 0.30 +0.1 4,538,552 - MIT1002_04043 0.32 -0.7 4,538,565 - MIT1002_04043 0.33 -0.6 4,538,629 - MIT1002_04043 0.37 -0.9 4,538,631 + MIT1002_04043 0.37 -0.5 4,538,736 + MIT1002_04043 0.44 +0.6 4,538,736 + MIT1002_04043 0.44 -0.3 4,538,744 - MIT1002_04043 0.44 +1.6 4,538,777 - MIT1002_04043 0.47 -0.4 4,538,811 + MIT1002_04043 0.49 -0.4 4,538,819 - MIT1002_04043 0.49 +2.4 4,538,878 - MIT1002_04043 0.53 -1.6 4,538,885 + MIT1002_04043 0.54 -0.9 4,538,893 + MIT1002_04043 0.54 +1.1 4,538,916 + MIT1002_04043 0.56 +0.2 4,538,981 + MIT1002_04043 0.60 -1.3 4,539,023 + MIT1002_04043 0.63 +1.5 4,539,066 + MIT1002_04043 0.66 +0.1 4,539,072 - MIT1002_04043 0.66 +1.1 4,539,114 - MIT1002_04043 0.69 +1.3 4,539,174 - MIT1002_04043 0.73 +0.5 4,539,296 + MIT1002_04043 0.81 +0.2 4,539,296 + MIT1002_04043 0.81 -1.0 4,539,335 - MIT1002_04043 0.83 -0.2 4,539,338 + MIT1002_04043 0.84 +1.8 4,539,358 + MIT1002_04043 0.85 +0.6 4,539,366 - MIT1002_04043 0.86 -0.7 4,539,396 + MIT1002_04043 0.88 +0.8 4,539,426 - MIT1002_04043 0.90 -5.2 4,539,497 + +0.5 4,539,539 - -0.4 4,539,541 + +0.6 4,539,640 - +0.0 4,539,650 - +1.3 4,539,650 - -1.8 4,539,650 - -0.4 4,539,650 - -0.7 4,539,650 - +1.0 4,539,688 + -3.2 4,539,696 - -1.5 4,539,696 - -3.5 4,539,696 - -5.2 4,539,696 - -7.7 4,539,696 - -2.0 4,539,740 + MIT1002_04044 0.14 -4.4 4,539,745 + MIT1002_04044 0.15 -1.7 4,539,749 + MIT1002_04044 0.15 -4.2 4,539,801 + MIT1002_04044 0.21 -6.2 4,539,822 - MIT1002_04044 0.23 -2.6 4,539,849 + MIT1002_04044 0.27 -2.2 4,539,875 + MIT1002_04044 0.29 -3.1 4,539,930 - MIT1002_04044 0.36 -3.7 4,539,949 + MIT1002_04044 0.38 -5.7 4,539,987 + MIT1002_04044 0.42 -2.2 4,539,987 + MIT1002_04044 0.42 -4.7 4,539,996 - MIT1002_04044 0.43 -3.4 4,540,043 - MIT1002_04044 0.49 -4.5 4,540,098 + MIT1002_04044 0.55 -2.0 4,540,106 - MIT1002_04044 0.56 -0.7 4,540,107 - MIT1002_04044 0.56 -4.0 4,540,141 - MIT1002_04044 0.60 -3.5 4,540,145 + MIT1002_04044 0.60 -3.8 4,540,145 + MIT1002_04044 0.60 -4.1 4,540,153 - MIT1002_04044 0.61 -3.2 4,540,163 - MIT1002_04044 0.62 -1.6 4,540,177 + MIT1002_04044 0.64 -4.7 4,540,177 + MIT1002_04044 0.64 -2.4 4,540,185 - MIT1002_04044 0.65 -4.9 4,540,250 + MIT1002_04044 0.72 -3.8 4,540,250 + MIT1002_04044 0.72 -6.0 4,540,263 + MIT1002_04044 0.74 -3.3 4,540,308 - MIT1002_04044 0.79 -4.1 4,540,318 - MIT1002_04044 0.80 -6.3 4,540,318 - MIT1002_04044 0.80 -0.1 4,540,340 + MIT1002_04044 0.82 -2.1 4,540,347 + MIT1002_04044 0.83 -0.5 4,540,348 - MIT1002_04044 0.83 -3.0 4,540,348 - MIT1002_04044 0.83 -1.1 4,540,348 - MIT1002_04044 0.83 -3.7 4,540,350 + MIT1002_04044 0.84 -2.3 4,540,350 + MIT1002_04044 0.84 -2.1 4,540,350 + MIT1002_04044 0.84 -2.3 4,540,350 + MIT1002_04044 0.84 -4.4 4,540,350 + MIT1002_04044 0.84 -3.6 4,540,355 + MIT1002_04044 0.84 -4.9 4,540,358 - MIT1002_04044 0.84 -3.7 4,540,358 - MIT1002_04044 0.84 -2.7 4,540,358 - MIT1002_04044 0.84 -2.3 4,540,358 - MIT1002_04044 0.84 -4.3 4,540,358 - MIT1002_04044 0.84 -2.5 4,540,365 - MIT1002_04044 0.85 -5.5 4,540,365 - MIT1002_04044 0.85 -5.6 4,540,383 - MIT1002_04044 0.87 -5.9 4,540,390 + MIT1002_04044 0.88 -4.2 4,540,390 + MIT1002_04044 0.88 -3.8 4,540,398 - MIT1002_04044 0.89 -3.5 4,540,398 - MIT1002_04044 0.89 -1.4 4,540,398 - MIT1002_04044 0.89 -4.2 4,540,398 - MIT1002_04044 0.89 -4.3 4,540,418 - -2.5 4,540,443 + -1.1 4,540,453 - -3.8 4,540,467 + -4.5 4,540,467 + -1.7 4,540,467 + -4.3 4,540,467 + -4.4 4,540,467 + -2.8 4,540,467 + -2.3 4,540,467 + -3.9 4,540,467 + -3.9 4,540,467 + -3.1 4,540,473 - -2.2 4,540,475 - -4.2 4,540,475 - -1.0 4,540,475 - -4.5 4,540,475 - -3.4 4,540,475 - -4.5 4,540,475 - -1.8 4,540,475 - -2.6 4,540,475 - -4.6 4,540,475 - -5.8 4,540,475 - -2.1 4,540,573 + -3.1 4,540,578 + -3.7
Or see this region's nucleotide sequence