Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04033

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
4,518,590	+		MIT1002_04031	0.84	-1.7
4,518,623	+				-0.4
4,518,635	+				+0.2
4,518,635	+				-2.2
4,518,643	-				-0.4
4,518,674	+				-1.0
4,518,677	-				+0.2
4,518,790	+		MIT1002_04032	0.17	-3.2
4,518,790	+		MIT1002_04032	0.17	-2.8
4,518,791	+		MIT1002_04032	0.17	-1.9
4,518,799	-		MIT1002_04032	0.18	-0.2
4,518,814	-		MIT1002_04032	0.20	-1.2
4,518,890	-		MIT1002_04032	0.28	+0.2
4,518,892	-		MIT1002_04032	0.28	-1.2
4,518,933	+		MIT1002_04032	0.33	-3.5
4,518,943	+		MIT1002_04032	0.34	-1.0
4,518,943	+		MIT1002_04032	0.34	-1.9
4,518,951	-		MIT1002_04032	0.35	-0.8
4,518,951	-		MIT1002_04032	0.35	-1.2
4,518,951	-		MIT1002_04032	0.35	-0.1
4,518,951	-		MIT1002_04032	0.35	-1.1
4,518,951	-		MIT1002_04032	0.35	-2.3
4,518,951	-		MIT1002_04032	0.35	-2.2
4,518,958	-		MIT1002_04032	0.36	-0.0
4,518,978	+		MIT1002_04032	0.38	-1.6
4,519,000	+		MIT1002_04032	0.40	-0.4
4,519,003	-		MIT1002_04032	0.41	-3.3
4,519,008	-		MIT1002_04032	0.41	-0.2
4,519,008	-		MIT1002_04032	0.41	-1.1
4,519,027	-		MIT1002_04032	0.44	-1.8
4,519,045	+		MIT1002_04032	0.46	-0.9
4,519,108	+		MIT1002_04032	0.53	+0.7
4,519,201	-		MIT1002_04032	0.63	-0.6
4,519,237	+		MIT1002_04032	0.67	-4.0
4,519,245	-		MIT1002_04032	0.68	+0.0
4,519,247	+		MIT1002_04032	0.68	-0.9
4,519,255	-		MIT1002_04032	0.69	-1.6
4,519,255	-		MIT1002_04032	0.69	-1.4
4,519,271	+		MIT1002_04032	0.71	-0.8
4,519,271	+		MIT1002_04032	0.71	-1.7
4,519,284	+		MIT1002_04032	0.72	-2.0
4,519,284	+		MIT1002_04032	0.72	-1.1
4,519,343	+		MIT1002_04032	0.79	-1.0
4,519,351	-		MIT1002_04032	0.80	-2.1
4,519,476	-				-1.1
4,519,540	+				-1.0
4,519,547	+				-2.4
4,519,548	-				+3.8
4,519,548	-				-4.8
4,519,588	-				-0.4
4,519,596	+				-1.5
4,519,616	-		MIT1002_04033	0.10	-0.7
4,519,638	-		MIT1002_04033	0.14	-3.7
4,519,638	-		MIT1002_04033	0.14	+0.0
4,519,688	+		MIT1002_04033	0.23	-0.9
4,519,696	-		MIT1002_04033	0.24	-2.1
4,519,703	+		MIT1002_04033	0.25	+0.1
4,519,715	+		MIT1002_04033	0.27	+1.0
4,519,768	-		MIT1002_04033	0.36	-1.2
4,519,779	-		MIT1002_04033	0.38	-4.4
4,519,784	-		MIT1002_04033	0.39	-2.5
4,519,815	-		MIT1002_04033	0.44	-3.4
4,519,876	-		MIT1002_04033	0.55	-0.2
4,519,884	-		MIT1002_04033	0.56	-2.0
4,519,968	+		MIT1002_04033	0.70	-1.4
4,519,972	+		MIT1002_04033	0.71	-2.3
4,520,095	+				-3.4
4,520,140	+				-0.5
4,520,151	-				-2.0
4,520,168	+				-0.2
4,520,176	-				+0.6
4,520,278	-				-0.4
4,520,301	-				-1.3
4,520,328	-				-1.0
4,520,464	+		MIT1002_04034	0.11	-2.2
4,520,477	-		MIT1002_04034	0.11	+0.8
4,520,505	-		MIT1002_04034	0.13	-1.0
4,520,505	-		MIT1002_04034	0.13	-2.6
4,520,521	-		MIT1002_04034	0.14	-0.4
4,520,550	+		MIT1002_04034	0.16	-2.3
4,520,555	+		MIT1002_04034	0.16	-2.5
4,520,615	+		MIT1002_04034	0.20	-3.5
4,520,650	+		MIT1002_04034	0.22	-3.3
4,520,656	-		MIT1002_04034	0.22	-3.6
4,520,656	-		MIT1002_04034	0.22	-0.1
4,520,699	-		MIT1002_04034	0.25	-0.6
4,520,758	-		MIT1002_04034	0.29	-1.5
4,520,758	-		MIT1002_04034	0.29	-0.4
4,520,772	-		MIT1002_04034	0.30	-0.5
4,520,781	+		MIT1002_04034	0.30	-1.1
4,520,802	-		MIT1002_04034	0.31	+0.6
4,520,877	+		MIT1002_04034	0.36	+0.2
4,520,877	-		MIT1002_04034	0.36	-1.7
4,520,897	+		MIT1002_04034	0.37	-2.0
4,520,967	-		MIT1002_04034	0.42	-3.4
4,520,969	+		MIT1002_04034	0.42	-1.7
4,520,976	+		MIT1002_04034	0.42	-0.7
4,520,976	+		MIT1002_04034	0.42	-0.1
4,520,984	-		MIT1002_04034	0.43	-0.7
4,520,984	-		MIT1002_04034	0.43	-1.8
4,520,984	-		MIT1002_04034	0.43	-1.6
4,520,984	-		MIT1002_04034	0.43	-3.1
4,520,984	-		MIT1002_04034	0.43	-1.9
4,520,989	-		MIT1002_04034	0.43	+0.8
4,520,989	-		MIT1002_04034	0.43	-1.0
4,520,989	-		MIT1002_04034	0.43	+0.1
4,520,994	-		MIT1002_04034	0.43	-2.5
4,521,007	+		MIT1002_04034	0.44	-3.6
4,521,023	-		MIT1002_04034	0.45	-5.2
4,521,113	-		MIT1002_04034	0.51	-3.0