Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04003

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
4,489,634	-		MIT1002_04001	0.75	+0.5
4,489,634	-		MIT1002_04001	0.75	+1.8
4,489,656	-		MIT1002_04001	0.76	-2.3
4,489,723	-		MIT1002_04001	0.79	-2.0
4,489,798	+		MIT1002_04001	0.83	-0.0
4,489,806	-		MIT1002_04001	0.84	-0.3
4,489,874	-		MIT1002_04001	0.87	-0.7
4,489,880	+		MIT1002_04001	0.87	+1.6
4,489,880	+		MIT1002_04001	0.87	-2.6
4,489,881	-		MIT1002_04001	0.87	+1.6
4,489,888	-		MIT1002_04001	0.88	-0.4
4,489,892	-		MIT1002_04001	0.88	-0.7
4,489,905	+		MIT1002_04001	0.89	+1.4
4,489,980	+				-3.5
4,489,980	+				-0.4
4,489,980	+				+0.1
4,489,988	-				-0.2
4,489,988	-				-2.2
4,489,988	-				-1.8
4,489,988	-				+0.0
4,489,988	-				+0.3
4,489,988	-				-0.2
4,490,005	+				-0.5
4,490,030	-				-0.5
4,490,037	+				-2.9
4,490,045	-				+0.3
4,490,116	+				+1.9
4,490,116	+				-0.6
4,490,185	-				-0.6
4,490,187	+				-0.1
4,490,235	+				-0.2
4,490,236	-				-0.5
4,490,243	-				+0.5
4,490,243	-				-1.8
4,490,243	-				-0.6
4,490,286	-		MIT1002_04002	0.20	-0.0
4,490,351	-		MIT1002_04002	0.52	-1.1
4,490,376	+		MIT1002_04002	0.64	-0.5
4,490,463	-				-0.1
4,490,481	+				+0.4
4,490,489	-				-0.3
4,490,489	-				-0.3
4,490,491	+				-1.6
4,490,491	+				-0.7
4,490,491	+				-2.3
4,490,491	+				-0.3
4,490,491	+				-0.0
4,490,499	-				-0.6
4,490,499	-				+0.7
4,490,499	-				+1.6
4,490,499	-				-0.0
4,490,507	-				+1.0
4,490,556	+				+0.4
4,490,599	-				-0.4
4,490,714	-				-0.7
4,490,727	+				-1.0
4,490,727	-				-0.4
4,490,727	-				-0.1
4,490,735	-				+0.8
4,490,810	+		MIT1002_04003	0.16	-1.2
4,490,851	-		MIT1002_04003	0.20	-0.0
4,490,862	+		MIT1002_04003	0.21	+1.2
4,490,862	+		MIT1002_04003	0.21	+0.9
4,490,870	-		MIT1002_04003	0.22	+0.8
4,490,870	-		MIT1002_04003	0.22	+0.3
4,490,870	-		MIT1002_04003	0.22	+1.8
4,490,870	-		MIT1002_04003	0.22	-1.8
4,490,870	-		MIT1002_04003	0.22	+0.3
4,490,870	-		MIT1002_04003	0.22	-2.6
4,490,870	-		MIT1002_04003	0.22	+1.0
4,490,870	-		MIT1002_04003	0.22	-0.2
4,490,870	-		MIT1002_04003	0.22	+0.7
4,490,967	+		MIT1002_04003	0.30	+1.0
4,490,972	+		MIT1002_04003	0.31	-1.2
4,490,989	-		MIT1002_04003	0.32	+1.3
4,490,989	-		MIT1002_04003	0.32	+0.8
4,491,009	-		MIT1002_04003	0.34	+1.2
4,491,084	+		MIT1002_04003	0.41	+1.8
4,491,092	-		MIT1002_04003	0.42	+0.9
4,491,106	+		MIT1002_04003	0.43	+0.2
4,491,192	+		MIT1002_04003	0.51	+2.5
4,491,207	-		MIT1002_04003	0.52	-2.5
4,491,222	+		MIT1002_04003	0.53	+0.7
4,491,244	+		MIT1002_04003	0.55	+0.3
4,491,335	+		MIT1002_04003	0.63	-2.5
4,491,394	+		MIT1002_04003	0.69	+0.2
4,491,406	+		MIT1002_04003	0.70	+1.0
4,491,445	-		MIT1002_04003	0.73	-1.5
4,491,467	-		MIT1002_04003	0.75	+0.2
4,491,485	+		MIT1002_04003	0.77	-0.8
4,491,572	+		MIT1002_04003	0.85	-1.9
4,491,580	-		MIT1002_04003	0.85	-2.0
4,491,690	+				+0.2
4,491,703	-				-1.0
4,491,766	+				-0.3
4,491,782	-		MIT1002_04004	0.11	+1.0
4,491,790	+		MIT1002_04004	0.16	-1.4
4,491,796	-		MIT1002_04004	0.20	-1.8
4,491,818	-		MIT1002_04004	0.34	+0.5
4,491,818	-		MIT1002_04004	0.34	-0.2
4,491,866	+		MIT1002_04004	0.64	+0.2
4,491,866	+		MIT1002_04004	0.64	+0.3
4,491,874	-		MIT1002_04004	0.69	-0.6
4,492,025	+				+2.1
4,492,038	-				-1.2
4,492,085	-				-0.4
4,492,098	-				-1.5
4,492,098	-				+1.4
4,492,110	-				-0.4
4,492,160	+				-0.4
4,492,160	+				+0.7
4,492,168	+				+0.4
4,492,246	+		MIT1002_04005	0.16	+0.1
4,492,285	-		MIT1002_04005	0.32	-1.3
4,492,349	+		MIT1002_04005	0.57	+0.2
4,492,349	+		MIT1002_04005	0.57	-1.4
4,492,349	+		MIT1002_04005	0.57	+0.3
4,492,349	+		MIT1002_04005	0.57	+0.5
4,492,349	+		MIT1002_04005	0.57	+1.6
4,492,357	-		MIT1002_04005	0.61	+1.5
4,492,362	-		MIT1002_04005	0.63	+1.5
4,492,396	+		MIT1002_04005	0.76	-0.5
4,492,493	+				-2.5
4,492,501	-				-0.3
4,492,558	-				+1.6
4,492,563	-		MIT1002_04006	0.10	-0.2
4,492,693	-		MIT1002_04006	0.23	-0.9