Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03994

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
4,479,724	+				-1.0
4,479,725	+				-1.0
4,479,735	+				+1.0
4,479,794	+		MIT1002_03993	0.10	+0.2
4,479,804	+		MIT1002_03993	0.11	-2.8
4,479,835	+		MIT1002_03993	0.15	-0.7
4,479,835	+		MIT1002_03993	0.15	-0.4
4,479,843	-		MIT1002_03993	0.16	-0.1
4,479,843	-		MIT1002_03993	0.16	-0.6
4,479,938	+		MIT1002_03993	0.27	-1.9
4,479,938	+		MIT1002_03993	0.27	+0.0
4,479,938	+		MIT1002_03993	0.27	-0.8
4,479,938	+		MIT1002_03993	0.27	-0.6
4,479,946	-		MIT1002_03993	0.28	-1.5
4,479,946	-		MIT1002_03993	0.28	-0.2
4,479,946	-		MIT1002_03993	0.28	-1.3
4,479,946	-		MIT1002_03993	0.28	+0.7
4,479,966	+		MIT1002_03993	0.30	-0.1
4,479,979	-		MIT1002_03993	0.32	-0.6
4,479,984	+		MIT1002_03993	0.33	-1.1
4,480,042	-		MIT1002_03993	0.39	-2.5
4,480,172	+		MIT1002_03993	0.55	+0.6
4,480,208	+		MIT1002_03993	0.59	-2.7
4,480,297	+		MIT1002_03993	0.70	-3.0
4,480,373	-		MIT1002_03993	0.78	+0.7
4,480,410	-		MIT1002_03993	0.83	-0.2
4,480,410	-		MIT1002_03993	0.83	+0.2
4,480,432	+		MIT1002_03993	0.85	-0.0
4,480,506	+				-0.2
4,480,519	-				-0.7
4,480,530	-				-2.7
4,480,580	+				-0.8
4,480,580	+				+0.9
4,480,580	+				+0.3
4,480,580	+				-1.1
4,480,580	+				+1.1
4,480,588	-				-0.7
4,480,590	+				-0.1
4,480,590	+				-0.9
4,480,598	-				+0.8
4,480,679	+				-0.4
4,480,687	-				+0.2
4,480,689	+				-0.2
4,480,725	+				+0.5
4,480,758	+		MIT1002_03994	0.13	+1.6
4,480,766	-		MIT1002_03994	0.14	-1.2
4,480,839	+		MIT1002_03994	0.27	-0.6
4,480,855	+		MIT1002_03994	0.30	+1.4
4,480,863	+		MIT1002_03994	0.31	+0.0
4,480,907	+		MIT1002_03994	0.38	+3.3
4,480,997	-		MIT1002_03994	0.54	-2.0
4,481,103	+		MIT1002_03994	0.72	-0.1
4,481,110	+		MIT1002_03994	0.73	-0.4
4,481,112	+		MIT1002_03994	0.74	-0.2
4,481,163	+		MIT1002_03994	0.82	+1.3
4,481,163	+		MIT1002_03994	0.82	-1.5
4,481,171	-		MIT1002_03994	0.84	+1.3
4,481,378	-				-0.2
4,481,391	+				+0.2
4,481,391	+				+0.8
4,481,399	-				+2.2
4,481,421	-				+0.4
4,481,451	-				+0.1
4,481,485	+				-1.4
4,481,488	-				+0.7
4,481,493	-				-1.0
4,481,540	-				+0.2
4,481,555	+				+2.8
4,481,593	+		MIT1002_03995	0.11	-0.1
4,481,601	-		MIT1002_03995	0.11	+1.2
4,481,603	+		MIT1002_03995	0.11	+0.4
4,481,603	+		MIT1002_03995	0.11	+1.9
4,481,643	+		MIT1002_03995	0.13	+1.0
4,481,670	-		MIT1002_03995	0.14	-1.0
4,481,695	-		MIT1002_03995	0.16	-3.0
4,481,709	+		MIT1002_03995	0.16	+0.7
4,481,787	+		MIT1002_03995	0.20	-2.4
4,481,788	-		MIT1002_03995	0.20	+0.9
4,481,953	+		MIT1002_03995	0.29	+0.7
4,481,953	+		MIT1002_03995	0.29	-3.2
4,481,972	-		MIT1002_03995	0.30	+2.5
4,482,054	-		MIT1002_03995	0.34	+1.5
4,482,115	+		MIT1002_03995	0.37	+0.1
4,482,115	-		MIT1002_03995	0.37	-0.7
4,482,189	-		MIT1002_03995	0.41	+0.5
4,482,213	-		MIT1002_03995	0.42	+0.4
4,482,213	-		MIT1002_03995	0.42	+0.7
4,482,230	+		MIT1002_03995	0.43	-1.8
4,482,235	+		MIT1002_03995	0.43	+1.4
4,482,243	-		MIT1002_03995	0.43	-1.3
4,482,248	-		MIT1002_03995	0.43	-0.8
4,482,248	-		MIT1002_03995	0.43	+0.3