Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03966

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_03965 and MIT1002_03966 are separated by 154 nucleotidesMIT1002_03966 and MIT1002_03967 are separated by 111 nucleotidesMIT1002_03967 and MIT1002_03968 are separated by 103 nucleotides MIT1002_03965: MIT1002_03965 - Phosphoribulokinase, plasmid, at 4,449,649 to 4,450,554 _03965 MIT1002_03966: MIT1002_03966 - hypothetical protein, at 4,450,709 to 4,451,854 _03966 MIT1002_03967: MIT1002_03967 - hypothetical protein, at 4,451,966 to 4,452,058 _03967 MIT1002_03968: MIT1002_03968 - Transcriptional regulatory protein OmpR, at 4,452,162 to 4,452,884 _03968 Position (kb) 4450 4451 4452Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 4449.792 kb on - strand, within MIT1002_03965at 4449.832 kb on - strand, within MIT1002_03965at 4449.841 kb on + strand, within MIT1002_03965at 4449.917 kb on + strand, within MIT1002_03965at 4449.947 kb on - strand, within MIT1002_03965at 4449.951 kb on + strand, within MIT1002_03965at 4449.986 kb on + strand, within MIT1002_03965at 4449.986 kb on + strand, within MIT1002_03965at 4449.986 kb on + strand, within MIT1002_03965at 4449.986 kb on + strand, within MIT1002_03965at 4449.986 kb on + strand, within MIT1002_03965at 4449.986 kb on + strand, within MIT1002_03965at 4449.986 kb on + strand, within MIT1002_03965at 4449.986 kb on + strand, within MIT1002_03965at 4449.986 kb on + strand, within MIT1002_03965at 4449.986 kb on + strand, within MIT1002_03965at 4449.986 kb on + strand, within MIT1002_03965at 4449.986 kb on + strand, within MIT1002_03965at 4449.986 kb on + strand, within MIT1002_03965at 4449.994 kb on - strand, within MIT1002_03965at 4449.994 kb on - strand, within MIT1002_03965at 4449.994 kb on - strand, within MIT1002_03965at 4449.994 kb on - strand, within MIT1002_03965at 4449.994 kb on - strand, within MIT1002_03965at 4449.994 kb on - strand, within MIT1002_03965at 4449.994 kb on - strand, within MIT1002_03965at 4449.995 kb on - strand, within MIT1002_03965at 4449.995 kb on - strand, within MIT1002_03965at 4450.039 kb on + strand, within MIT1002_03965at 4450.149 kb on + strand, within MIT1002_03965at 4450.157 kb on - strand, within MIT1002_03965at 4450.188 kb on + strand, within MIT1002_03965at 4450.191 kb on - strand, within MIT1002_03965at 4450.193 kb on + strand, within MIT1002_03965at 4450.201 kb on - strand, within MIT1002_03965at 4450.287 kb on + strand, within MIT1002_03965at 4450.294 kb on - strand, within MIT1002_03965at 4450.294 kb on - strand, within MIT1002_03965at 4450.331 kb on + strand, within MIT1002_03965at 4450.339 kb on - strand, within MIT1002_03965at 4450.379 kb on - strand, within MIT1002_03965at 4450.427 kb on - strand, within MIT1002_03965at 4450.427 kb on - strand, within MIT1002_03965at 4450.432 kb on + strand, within MIT1002_03965at 4450.435 kb on - strand, within MIT1002_03965at 4450.470 kb on + strandat 4450.478 kb on - strandat 4450.480 kb on - strandat 4450.509 kb on + strandat 4450.563 kb on - strandat 4450.609 kb on + strandat 4450.615 kb on - strandat 4450.762 kb on + strandat 4450.770 kb on - strandat 4450.841 kb on - strand, within MIT1002_03966at 4450.863 kb on + strand, within MIT1002_03966at 4450.863 kb on + strand, within MIT1002_03966at 4450.876 kb on - strand, within MIT1002_03966at 4450.934 kb on + strand, within MIT1002_03966at 4450.942 kb on - strand, within MIT1002_03966at 4450.966 kb on - strand, within MIT1002_03966at 4451.010 kb on + strand, within MIT1002_03966at 4451.083 kb on - strand, within MIT1002_03966at 4451.112 kb on + strand, within MIT1002_03966at 4451.120 kb on - strand, within MIT1002_03966at 4451.173 kb on - strand, within MIT1002_03966at 4451.241 kb on - strand, within MIT1002_03966at 4451.292 kb on - strand, within MIT1002_03966at 4451.301 kb on + strand, within MIT1002_03966at 4451.304 kb on - strand, within MIT1002_03966at 4451.307 kb on - strand, within MIT1002_03966at 4451.329 kb on - strand, within MIT1002_03966at 4451.416 kb on + strand, within MIT1002_03966at 4451.441 kb on + strand, within MIT1002_03966at 4451.449 kb on - strand, within MIT1002_03966at 4451.449 kb on - strand, within MIT1002_03966at 4451.449 kb on - strand, within MIT1002_03966at 4451.449 kb on - strand, within MIT1002_03966at 4451.483 kb on + strand, within MIT1002_03966at 4451.515 kb on - strand, within MIT1002_03966at 4451.562 kb on + strand, within MIT1002_03966at 4451.562 kb on + strand, within MIT1002_03966at 4451.562 kb on + strand, within MIT1002_03966at 4451.562 kb on + strand, within MIT1002_03966at 4451.562 kb on + strand, within MIT1002_03966at 4451.570 kb on - strand, within MIT1002_03966at 4451.580 kb on - strand, within MIT1002_03966at 4451.610 kb on + strand, within MIT1002_03966at 4451.610 kb on + strand, within MIT1002_03966at 4451.618 kb on - strand, within MIT1002_03966at 4451.632 kb on + strand, within MIT1002_03966at 4451.652 kb on + strand, within MIT1002_03966at 4451.786 kb on + strandat 4451.786 kb on + strandat 4451.786 kb on - strandat 4451.796 kb on - strandat 4451.837 kb on - strandat 4451.909 kb on - strandat 4451.914 kb on - strandat 4452.052 kb on + strandat 4452.052 kb on + strandat 4452.052 kb on + strandat 4452.217 kb on + strandat 4452.217 kb on + strandat 4452.225 kb on - strandat 4452.225 kb on - strandat 4452.225 kb on - strandat 4452.225 kb on - strandat 4452.245 kb on + strand, within MIT1002_03968at 4452.247 kb on + strand, within MIT1002_03968at 4452.253 kb on - strand, within MIT1002_03968at 4452.255 kb on - strand, within MIT1002_03968at 4452.297 kb on - strand, within MIT1002_03968at 4452.321 kb on + strand, within MIT1002_03968at 4452.342 kb on + strand, within MIT1002_03968at 4452.372 kb on - strand, within MIT1002_03968at 4452.400 kb on + strand, within MIT1002_03968at 4452.481 kb on + strand, within MIT1002_03968at 4452.557 kb on + strand, within MIT1002_03968at 4452.565 kb on - strand, within MIT1002_03968at 4452.636 kb on + strand, within MIT1002_03968at 4452.636 kb on + strand, within MIT1002_03968at 4452.636 kb on + strand, within MIT1002_03968at 4452.636 kb on - strand, within MIT1002_03968at 4452.644 kb on - strand, within MIT1002_03968at 4452.644 kb on - strand, within MIT1002_03968at 4452.644 kb on - strand, within MIT1002_03968at 4452.717 kb on + strand, within MIT1002_03968at 4452.759 kb on - strand, within MIT1002_03968at 4452.759 kb on - strand, within MIT1002_03968at 4452.763 kb on + strand, within MIT1002_03968at 4452.837 kb on + strandat 4452.843 kb on + strandat 4452.843 kb on + strandat 4452.843 kb on + strandat 4452.843 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
remove
4,449,792 - MIT1002_03965 0.16 -4.8
4,449,832 - MIT1002_03965 0.20 -1.0
4,449,841 + MIT1002_03965 0.21 -2.5
4,449,917 + MIT1002_03965 0.30 -1.5
4,449,947 - MIT1002_03965 0.33 -2.5
4,449,951 + MIT1002_03965 0.33 -0.3
4,449,986 + MIT1002_03965 0.37 -1.7
4,449,986 + MIT1002_03965 0.37 -1.2
4,449,986 + MIT1002_03965 0.37 -1.1
4,449,986 + MIT1002_03965 0.37 +0.2
4,449,986 + MIT1002_03965 0.37 -0.8
4,449,986 + MIT1002_03965 0.37 -2.4
4,449,986 + MIT1002_03965 0.37 -1.3
4,449,986 + MIT1002_03965 0.37 +0.2
4,449,986 + MIT1002_03965 0.37 -0.5
4,449,986 + MIT1002_03965 0.37 +1.8
4,449,986 + MIT1002_03965 0.37 -2.8
4,449,986 + MIT1002_03965 0.37 +0.9
4,449,986 + MIT1002_03965 0.37 -2.9
4,449,994 - MIT1002_03965 0.38 -3.0
4,449,994 - MIT1002_03965 0.38 -2.9
4,449,994 - MIT1002_03965 0.38 -1.5
4,449,994 - MIT1002_03965 0.38 -2.1
4,449,994 - MIT1002_03965 0.38 -1.8
4,449,994 - MIT1002_03965 0.38 -3.2
4,449,994 - MIT1002_03965 0.38 -0.8
4,449,995 - MIT1002_03965 0.38 -4.4
4,449,995 - MIT1002_03965 0.38 +2.0
4,450,039 + MIT1002_03965 0.43 -1.3
4,450,149 + MIT1002_03965 0.55 -1.0
4,450,157 - MIT1002_03965 0.56 -4.5
4,450,188 + MIT1002_03965 0.59 -3.3
4,450,191 - MIT1002_03965 0.60 -0.0
4,450,193 + MIT1002_03965 0.60 -0.7
4,450,201 - MIT1002_03965 0.61 -1.2
4,450,287 + MIT1002_03965 0.70 -3.6
4,450,294 - MIT1002_03965 0.71 -1.0
4,450,294 - MIT1002_03965 0.71 -3.0
4,450,331 + MIT1002_03965 0.75 -3.4
4,450,339 - MIT1002_03965 0.76 -1.6
4,450,379 - MIT1002_03965 0.81 -2.3
4,450,427 - MIT1002_03965 0.86 -3.7
4,450,427 - MIT1002_03965 0.86 -4.5
4,450,432 + MIT1002_03965 0.86 -0.1
4,450,435 - MIT1002_03965 0.87 -1.8
4,450,470 + -1.7
4,450,478 - -0.9
4,450,480 - -0.2
4,450,509 + +0.9
4,450,563 - -0.2
4,450,609 + -1.9
4,450,615 - +0.5
4,450,762 + -0.2
4,450,770 - -0.3
4,450,841 - MIT1002_03966 0.12 -1.6
4,450,863 + MIT1002_03966 0.13 +0.2
4,450,863 + MIT1002_03966 0.13 +0.5
4,450,876 - MIT1002_03966 0.15 -0.2
4,450,934 + MIT1002_03966 0.20 -0.1
4,450,942 - MIT1002_03966 0.20 +0.1
4,450,966 - MIT1002_03966 0.22 -1.9
4,451,010 + MIT1002_03966 0.26 +1.6
4,451,083 - MIT1002_03966 0.33 +0.0
4,451,112 + MIT1002_03966 0.35 +1.0
4,451,120 - MIT1002_03966 0.36 +1.9
4,451,173 - MIT1002_03966 0.40 -0.2
4,451,241 - MIT1002_03966 0.46 +0.7
4,451,292 - MIT1002_03966 0.51 -0.8
4,451,301 + MIT1002_03966 0.52 +0.7
4,451,304 - MIT1002_03966 0.52 -1.1
4,451,307 - MIT1002_03966 0.52 +1.6
4,451,329 - MIT1002_03966 0.54 +3.3
4,451,416 + MIT1002_03966 0.62 -0.1
4,451,441 + MIT1002_03966 0.64 +0.5
4,451,449 - MIT1002_03966 0.65 -1.3
4,451,449 - MIT1002_03966 0.65 +0.3
4,451,449 - MIT1002_03966 0.65 +1.0
4,451,449 - MIT1002_03966 0.65 +1.3
4,451,483 + MIT1002_03966 0.68 +1.0
4,451,515 - MIT1002_03966 0.70 -0.2
4,451,562 + MIT1002_03966 0.74 +0.8
4,451,562 + MIT1002_03966 0.74 +0.3
4,451,562 + MIT1002_03966 0.74 -0.4
4,451,562 + MIT1002_03966 0.74 +0.7
4,451,562 + MIT1002_03966 0.74 +1.1
4,451,570 - MIT1002_03966 0.75 +0.5
4,451,580 - MIT1002_03966 0.76 +0.6
4,451,610 + MIT1002_03966 0.79 -0.3
4,451,610 + MIT1002_03966 0.79 +0.7
4,451,618 - MIT1002_03966 0.79 -1.5
4,451,632 + MIT1002_03966 0.81 +2.4
4,451,652 + MIT1002_03966 0.82 +1.4
4,451,786 + +0.9
4,451,786 + -1.9
4,451,786 - +0.2
4,451,796 - +1.0
4,451,837 - -1.2
4,451,909 - -0.3
4,451,914 - -0.0
4,452,052 + +1.0
4,452,052 + -1.1
4,452,052 + +0.0
4,452,217 + +0.3
4,452,217 + +0.2
4,452,225 - +0.1
4,452,225 - +0.8
4,452,225 - -1.5
4,452,225 - -1.2
4,452,245 + MIT1002_03968 0.11 -0.7
4,452,247 + MIT1002_03968 0.12 -0.0
4,452,253 - MIT1002_03968 0.13 +0.4
4,452,255 - MIT1002_03968 0.13 +0.3
4,452,297 - MIT1002_03968 0.19 +1.2
4,452,321 + MIT1002_03968 0.22 +0.2
4,452,342 + MIT1002_03968 0.25 +0.4
4,452,372 - MIT1002_03968 0.29 +1.2
4,452,400 + MIT1002_03968 0.33 +0.3
4,452,481 + MIT1002_03968 0.44 +0.7
4,452,557 + MIT1002_03968 0.55 -0.4
4,452,565 - MIT1002_03968 0.56 -0.4
4,452,636 + MIT1002_03968 0.66 -1.2
4,452,636 + MIT1002_03968 0.66 -0.5
4,452,636 + MIT1002_03968 0.66 -0.2
4,452,636 - MIT1002_03968 0.66 +0.5
4,452,644 - MIT1002_03968 0.67 -0.3
4,452,644 - MIT1002_03968 0.67 -0.2
4,452,644 - MIT1002_03968 0.67 -0.3
4,452,717 + MIT1002_03968 0.77 -0.4
4,452,759 - MIT1002_03968 0.83 +1.1
4,452,759 - MIT1002_03968 0.83 +1.4
4,452,763 + MIT1002_03968 0.83 -0.9
4,452,837 + +1.0
4,452,843 + -0.4
4,452,843 + +0.6
4,452,843 + -0.6
4,452,843 - -0.9

Or see this region's nucleotide sequence