Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03842

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
4,301,932	+		MIT1002_03841	0.38	-0.2
4,301,981	-		MIT1002_03841	0.42	+1.3
4,302,015	-		MIT1002_03841	0.44	-0.2
4,302,039	-		MIT1002_03841	0.46	-0.7
4,302,065	-		MIT1002_03841	0.48	+1.1
4,302,085	-		MIT1002_03841	0.50	-1.2
4,302,154	-		MIT1002_03841	0.55	-0.6
4,302,177	-		MIT1002_03841	0.57	+0.2
4,302,179	+		MIT1002_03841	0.57	-0.1
4,302,185	-		MIT1002_03841	0.58	+0.3
4,302,218	-		MIT1002_03841	0.60	+1.6
4,302,277	+		MIT1002_03841	0.65	-1.1
4,302,277	+		MIT1002_03841	0.65	-0.8
4,302,285	-		MIT1002_03841	0.66	+2.1
4,302,308	+		MIT1002_03841	0.68	+0.3
4,302,308	+		MIT1002_03841	0.68	-0.2
4,302,309	-		MIT1002_03841	0.68	+0.8
4,302,326	-		MIT1002_03841	0.69	-0.0
4,302,338	-		MIT1002_03841	0.70	-0.0
4,302,423	+		MIT1002_03841	0.77	-1.6
4,302,423	+		MIT1002_03841	0.77	+0.2
4,302,423	+		MIT1002_03841	0.77	+0.3
4,302,424	+		MIT1002_03841	0.77	+0.4
4,302,426	-		MIT1002_03841	0.77	+0.7
4,302,440	+		MIT1002_03841	0.78	+1.0
4,302,440	+		MIT1002_03841	0.78	-2.3
4,302,453	-		MIT1002_03841	0.79	-0.1
4,302,497	-		MIT1002_03841	0.83	-0.6
4,302,629	-				+0.0
4,302,644	+				+0.2
4,302,668	+				+0.0
4,302,699	-				-0.6
4,302,701	+				-1.3
4,302,701	+				+0.5
4,302,701	+				-1.9
4,302,701	+				+0.3
4,302,706	+				-2.0
4,302,709	-				+0.9
4,302,860	+				-0.5
4,302,868	-				+0.4
4,302,870	+				-3.1
4,302,870	+				+0.7
4,302,870	+				+0.5
4,302,870	+				+1.0
4,302,878	-				+0.5
4,302,878	-				-0.7
4,302,878	-				-3.3
4,302,904	+				-0.5
4,303,096	+		MIT1002_03842	0.13	+0.5
4,303,096	+		MIT1002_03842	0.13	+1.1
4,303,135	-		MIT1002_03842	0.16	-0.5
4,303,159	-		MIT1002_03842	0.17	-1.4
4,303,160	+		MIT1002_03842	0.18	+0.1
4,303,160	+		MIT1002_03842	0.18	-1.8
4,303,168	-		MIT1002_03842	0.18	+1.3
4,303,168	-		MIT1002_03842	0.18	-0.6
4,303,170	+		MIT1002_03842	0.18	-1.9
4,303,170	+		MIT1002_03842	0.18	+0.5
4,303,178	-		MIT1002_03842	0.19	+0.2
4,303,178	-		MIT1002_03842	0.19	-1.3
4,303,178	-		MIT1002_03842	0.19	-0.5
4,303,268	+		MIT1002_03842	0.25	-0.1
4,303,276	-		MIT1002_03842	0.26	-1.0
4,303,296	+		MIT1002_03842	0.28	-1.0
4,303,313	+		MIT1002_03842	0.29	-0.8
4,303,418	-		MIT1002_03842	0.36	+0.9
4,303,429	-		MIT1002_03842	0.37	-1.1
4,303,434	+		MIT1002_03842	0.38	-0.0
4,303,466	+		MIT1002_03842	0.40	+0.8
4,303,477	+		MIT1002_03842	0.41	+1.2
4,303,501	+		MIT1002_03842	0.43	+1.6
4,303,546	-		MIT1002_03842	0.46	-0.3
4,303,594	-		MIT1002_03842	0.49	-0.4
4,303,599	-		MIT1002_03842	0.50	-0.0
4,303,636	+		MIT1002_03842	0.53	+0.4
4,303,644	-		MIT1002_03842	0.53	+0.5
4,303,644	-		MIT1002_03842	0.53	+0.4
4,303,644	-		MIT1002_03842	0.53	+1.4
4,303,682	+		MIT1002_03842	0.56	-0.1
4,303,917	-		MIT1002_03842	0.73	+0.4
4,303,948	+		MIT1002_03842	0.75	+0.1
4,304,004	+		MIT1002_03842	0.80	-0.3
4,304,020	+		MIT1002_03842	0.81	-1.6
4,304,028	-		MIT1002_03842	0.81	+0.7
4,304,028	-		MIT1002_03842	0.81	+0.7
4,304,078	-		MIT1002_03842	0.85	+0.8
4,304,097	-		MIT1002_03842	0.86	+0.0
4,304,148	+				+1.4
4,304,151	-				-2.4
4,304,156	-				+0.4
4,304,161	-				-0.9
4,304,212	-				+0.1
4,304,228	+				+0.1
4,304,247	-				-1.0
4,304,287	+				+1.0
4,304,295	-				+1.9
4,304,325	-				-1.7
4,304,335	-				-1.4
4,304,436	+		MIT1002_03843	0.14	-2.4
4,304,437	-		MIT1002_03843	0.14	-1.6
4,304,495	+		MIT1002_03843	0.20	-3.2
4,304,495	+		MIT1002_03843	0.20	-1.0
4,304,495	+		MIT1002_03843	0.20	-0.4
4,304,503	-		MIT1002_03843	0.20	-1.4
4,304,503	-		MIT1002_03843	0.20	-2.7
4,304,510	+		MIT1002_03843	0.21	-0.7
4,304,686	-		MIT1002_03843	0.39	-3.5
4,304,696	+		MIT1002_03843	0.40	-1.4
4,304,704	-		MIT1002_03843	0.40	-2.8
4,304,706	-		MIT1002_03843	0.41	-1.6
4,304,760	-		MIT1002_03843	0.46	-3.4
4,304,775	-		MIT1002_03843	0.48	-2.0
4,304,775	-		MIT1002_03843	0.48	-0.9
4,304,775	-		MIT1002_03843	0.48	-0.3
4,304,889	+		MIT1002_03843	0.59	-1.5
4,304,915	+		MIT1002_03843	0.61	-2.8
4,304,922	-		MIT1002_03843	0.62	-0.5