Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03825

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
4,273,436	+		MIT1002_03824	0.25	-1.3
4,273,441	+		MIT1002_03824	0.25	-0.3
4,273,449	-		MIT1002_03824	0.26	+0.2
4,273,451	+		MIT1002_03824	0.26	-1.7
4,273,454	-		MIT1002_03824	0.26	+0.2
4,273,461	-		MIT1002_03824	0.27	+2.3
4,273,544	+		MIT1002_03824	0.35	+0.3
4,273,544	+		MIT1002_03824	0.35	+1.6
4,273,544	+		MIT1002_03824	0.35	+0.1
4,273,544	+		MIT1002_03824	0.35	+0.6
4,273,552	-		MIT1002_03824	0.35	+0.5
4,273,552	-		MIT1002_03824	0.35	-0.7
4,273,552	-		MIT1002_03824	0.35	+1.1
4,273,618	+		MIT1002_03824	0.41	-1.0
4,273,626	-		MIT1002_03824	0.42	+0.5
4,273,637	-		MIT1002_03824	0.43	+0.0
4,273,647	-		MIT1002_03824	0.44	+0.4
4,273,654	+		MIT1002_03824	0.45	-2.3
4,273,654	+		MIT1002_03824	0.45	+1.0
4,273,654	+		MIT1002_03824	0.45	-0.6
4,273,654	+		MIT1002_03824	0.45	-0.6
4,273,662	-		MIT1002_03824	0.46	-1.0
4,273,662	-		MIT1002_03824	0.46	+1.2
4,273,662	-		MIT1002_03824	0.46	+0.7
4,273,680	-		MIT1002_03824	0.47	-0.8
4,273,738	+		MIT1002_03824	0.53	+0.4
4,273,738	+		MIT1002_03824	0.53	-2.5
4,273,746	-		MIT1002_03824	0.53	-3.0
4,273,860	+		MIT1002_03824	0.64	-0.8
4,273,888	-		MIT1002_03824	0.66	+0.2
4,273,906	+		MIT1002_03824	0.68	-0.5
4,273,906	+		MIT1002_03824	0.68	+0.6
4,273,981	-		MIT1002_03824	0.75	+0.1
4,273,991	+		MIT1002_03824	0.76	-0.7
4,274,041	+		MIT1002_03824	0.81	-1.1
4,274,072	-		MIT1002_03824	0.83	+0.9
4,274,080	-		MIT1002_03824	0.84	-1.2
4,274,083	-		MIT1002_03824	0.84	-2.4
4,274,107	-		MIT1002_03824	0.87	-1.5
4,274,185	-				-0.1
4,274,190	+				-2.6
4,274,192	+				+0.9
4,274,207	+				-0.4
4,274,321	-				+0.4
4,274,327	-				+1.4
4,274,342	+				+1.1
4,274,343	-				-0.1
4,274,343	-				+0.6
4,274,399	-				-1.4
4,274,399	-				-1.3
4,274,470	-		MIT1002_03825	0.16	+0.8
4,274,482	+		MIT1002_03825	0.19	-1.5
4,274,490	-		MIT1002_03825	0.21	+2.0
4,274,490	-		MIT1002_03825	0.21	+0.3
4,274,549	+		MIT1002_03825	0.36	-1.2
4,274,567	-		MIT1002_03825	0.41	+0.1
4,274,609	+		MIT1002_03825	0.51	-0.2
4,274,609	+		MIT1002_03825	0.51	+1.4
4,274,609	+		MIT1002_03825	0.51	+0.4
4,274,609	+		MIT1002_03825	0.51	+0.4
4,274,609	+		MIT1002_03825	0.51	+0.0
4,274,609	+		MIT1002_03825	0.51	+1.2
4,274,609	+		MIT1002_03825	0.51	+1.0
4,274,609	+		MIT1002_03825	0.51	+0.8
4,274,617	-		MIT1002_03825	0.53	+1.0
4,274,658	-		MIT1002_03825	0.63	+1.0
4,274,679	-		MIT1002_03825	0.68	+2.9
4,274,681	+		MIT1002_03825	0.69	+1.1
4,274,821	-				-0.1
4,274,841	-				-0.1
4,274,841	-				+0.6
4,274,847	+				-2.1
4,274,855	-				+0.0
4,274,855	-				+0.3
4,274,874	-				+1.7
4,275,069	-		MIT1002_03826	0.16	+1.3
4,275,082	+		MIT1002_03826	0.17	+0.6
4,275,089	-		MIT1002_03826	0.17	-2.3
4,275,092	-		MIT1002_03826	0.18	+0.1
4,275,092	-		MIT1002_03826	0.18	+0.6
4,275,116	+		MIT1002_03826	0.19	+1.0
4,275,116	+		MIT1002_03826	0.19	+0.7
4,275,116	+		MIT1002_03826	0.19	-1.1
4,275,116	+		MIT1002_03826	0.19	-0.9
4,275,122	-		MIT1002_03826	0.20	-2.3
4,275,124	-		MIT1002_03826	0.20	-0.4
4,275,152	+		MIT1002_03826	0.22	+0.1
4,275,202	+		MIT1002_03826	0.26	+0.7
4,275,303	-		MIT1002_03826	0.33	+0.6
4,275,351	-		MIT1002_03826	0.36	-1.0
4,275,494	+		MIT1002_03826	0.47	-0.6
4,275,502	-		MIT1002_03826	0.47	-0.4
4,275,556	-		MIT1002_03826	0.51	+0.5
4,275,556	-		MIT1002_03826	0.51	+0.3
4,275,565	-		MIT1002_03826	0.52	-1.9
4,275,567	+		MIT1002_03826	0.52	+1.6
4,275,574	+		MIT1002_03826	0.52	-0.3
4,275,581	+		MIT1002_03826	0.53	-0.2
4,275,582	+		MIT1002_03826	0.53	-0.5
4,275,582	+		MIT1002_03826	0.53	+0.1
4,275,582	+		MIT1002_03826	0.53	+0.9
4,275,582	+		MIT1002_03826	0.53	-2.6
4,275,582	-		MIT1002_03826	0.53	+0.6
4,275,590	-		MIT1002_03826	0.54	+0.4
4,275,590	-		MIT1002_03826	0.54	+0.3
4,275,590	-		MIT1002_03826	0.54	-1.2
4,275,590	-		MIT1002_03826	0.54	+0.1
4,275,590	-		MIT1002_03826	0.54	+0.7
4,275,597	-		MIT1002_03826	0.54	-0.8
4,275,606	+		MIT1002_03826	0.55	-0.7
4,275,662	+		MIT1002_03826	0.59	+0.9
4,275,670	-		MIT1002_03826	0.59	-0.5
4,275,704	-		MIT1002_03826	0.62	+2.2
4,275,715	+		MIT1002_03826	0.63	+0.3
4,275,761	+		MIT1002_03826	0.66	-0.8