Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03653

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
4,086,868	-		MIT1002_03652	0.21	-1.1
4,086,881	+		MIT1002_03652	0.22	-3.7
4,086,970	+		MIT1002_03652	0.29	-0.2
4,086,975	+		MIT1002_03652	0.29	-2.5
4,087,014	-		MIT1002_03652	0.33	+0.9
4,087,016	+		MIT1002_03652	0.33	-1.1
4,087,022	-		MIT1002_03652	0.33	-0.0
4,087,047	-		MIT1002_03652	0.35	-0.0
4,087,058	-		MIT1002_03652	0.36	-2.4
4,087,126	+		MIT1002_03652	0.41	+0.9
4,087,134	-		MIT1002_03652	0.42	-0.1
4,087,146	+		MIT1002_03652	0.43	-0.8
4,087,384	-		MIT1002_03652	0.62	-1.0
4,087,418	-		MIT1002_03652	0.65	+0.6
4,087,473	-		MIT1002_03652	0.69	+0.8
4,087,476	+		MIT1002_03652	0.69	-1.7
4,087,484	-		MIT1002_03652	0.70	-0.5
4,087,484	-		MIT1002_03652	0.70	-0.4
4,087,506	+		MIT1002_03652	0.72	-1.3
4,087,535	-		MIT1002_03652	0.74	-0.8
4,087,545	-		MIT1002_03652	0.75	+0.6
4,087,565	-		MIT1002_03652	0.76	-2.6
4,087,631	-		MIT1002_03652	0.82	+0.3
4,087,651	+		MIT1002_03652	0.83	-1.2
4,087,728	+		MIT1002_03652	0.89	-0.9
4,087,817	+				-0.0
4,087,830	+				-0.4
4,087,875	-				-0.0
4,087,877	-				-0.0
4,087,933	-				+1.6
4,087,955	-				+1.1
4,087,981	+				-1.4
4,087,981	+				+0.9
4,087,981	+				+0.3
4,087,989	-				-1.6
4,088,051	-				+0.4
4,088,247	+		MIT1002_03653	0.17	+0.2
4,088,255	-		MIT1002_03653	0.17	-1.4
4,088,331	+		MIT1002_03653	0.21	+1.0
4,088,381	+		MIT1002_03653	0.23	-0.4
4,088,461	-		MIT1002_03653	0.26	-0.3
4,088,646	+		MIT1002_03653	0.35	-0.5
4,088,708	-		MIT1002_03653	0.37	-0.7
4,088,738	+		MIT1002_03653	0.39	-0.7
4,088,738	+		MIT1002_03653	0.39	-0.5
4,088,761	+		MIT1002_03653	0.40	+1.4
4,088,806	+		MIT1002_03653	0.42	+0.7
4,088,806	+		MIT1002_03653	0.42	-0.3
4,088,860	-		MIT1002_03653	0.44	-0.5
4,088,947	-		MIT1002_03653	0.48	+0.1
4,088,966	+		MIT1002_03653	0.49	-2.1
4,088,974	-		MIT1002_03653	0.49	+0.0
4,089,053	+		MIT1002_03653	0.53	-0.8
4,089,067	+		MIT1002_03653	0.53	+0.2
4,089,108	+		MIT1002_03653	0.55	-0.3
4,089,164	-		MIT1002_03653	0.57	-0.1
4,089,236	+		MIT1002_03653	0.61	-0.3
4,089,278	-		MIT1002_03653	0.62	-0.8
4,089,280	+		MIT1002_03653	0.63	-0.6
4,089,280	+		MIT1002_03653	0.63	+0.6
4,089,280	+		MIT1002_03653	0.63	-0.1
4,089,288	-		MIT1002_03653	0.63	-0.7
4,089,288	-		MIT1002_03653	0.63	-2.1
4,089,288	-		MIT1002_03653	0.63	+1.0
4,089,307	+		MIT1002_03653	0.64	-0.2
4,089,345	+		MIT1002_03653	0.65	+1.2
4,089,345	+		MIT1002_03653	0.65	+0.6
4,089,361	-		MIT1002_03653	0.66	+2.6
4,089,386	-		MIT1002_03653	0.67	-0.0
4,089,493	-		MIT1002_03653	0.72	-0.0
4,089,584	+		MIT1002_03653	0.76	-2.2
4,089,612	-		MIT1002_03653	0.77	-0.3
4,089,653	-		MIT1002_03653	0.79	+0.3
4,089,731	+		MIT1002_03653	0.82	+1.3
4,089,808	+		MIT1002_03653	0.86	-0.3
4,089,816	-		MIT1002_03653	0.86	-0.4
4,089,840	+		MIT1002_03653	0.87	-1.0
4,089,848	-		MIT1002_03653	0.88	+0.2
4,089,935	-				-0.6
4,089,967	+				-0.7
4,089,975	-				-1.3
4,090,009	+				+0.7
4,090,036	+				+2.1
4,090,044	-				-0.1
4,090,044	-				-1.6
4,090,044	-				-1.2
4,090,044	-				+0.4
4,090,066	+				+0.2
4,090,067	-				+1.7
4,090,074	-				-1.9
4,090,082	+				+0.5
4,090,158	+		MIT1002_03654	0.10	+0.1
4,090,199	+		MIT1002_03654	0.23	-0.1
4,090,199	+		MIT1002_03654	0.23	+1.2
4,090,207	+		MIT1002_03654	0.26	-0.7
4,090,212	+		MIT1002_03654	0.28	-3.2
4,090,215	-		MIT1002_03654	0.29	-0.7
4,090,217	+		MIT1002_03654	0.29	-0.1
4,090,217	+		MIT1002_03654	0.29	-0.4
4,090,220	-		MIT1002_03654	0.30	+2.5
4,090,225	-		MIT1002_03654	0.32	-1.1
4,090,252	+		MIT1002_03654	0.40	+1.0
4,090,387	-		MIT1002_03654	0.84	-0.1
4,090,423	-				-1.2
4,090,439	+				-0.5
4,090,440	-				+1.9
4,090,457	-				-1.8
4,090,618	+		MIT1002_03655	0.64	-0.9
4,090,620	-		MIT1002_03655	0.65	-2.0
4,090,620	-		MIT1002_03655	0.65	-0.6
4,090,626	-		MIT1002_03655	0.68	+0.3
4,090,626	-		MIT1002_03655	0.68	+0.9
4,090,626	-		MIT1002_03655	0.68	-0.8
4,090,715	+				+1.1
4,090,732	-				+0.3
4,090,732	-				-0.5
4,090,732	-				+1.1
4,090,749	+				+1.2
4,090,766	-				+0.3
4,090,767	+				-0.1
4,090,768	-				-2.2
4,090,814	+				+2.5
4,090,814	+				+0.6
4,090,814	+				+0.0
4,090,814	+				+0.7
4,090,822	-				-0.3
4,090,822	-				+0.7
4,090,822	-				-1.3
4,090,822	-				-1.6
4,090,822	-				+0.7
4,090,822	-				-0.1
4,090,824	-				+2.2
4,090,824	-				-0.6
4,090,824	-				+1.0
4,090,867	-				+1.2
4,090,961	-		MIT1002_03656	0.16	-2.1
4,090,990	+		MIT1002_03656	0.19	+1.5
4,091,003	-		MIT1002_03656	0.20	+0.8
4,091,043	-		MIT1002_03656	0.24	-2.0