Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03649

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
4,081,624	-				+0.1
4,081,641	-				+1.3
4,081,648	+				+0.5
4,081,796	+				-0.7
4,081,944	+		MIT1002_03648	0.17	-1.0
4,081,973	+		MIT1002_03648	0.21	+0.2
4,082,002	-		MIT1002_03648	0.25	-0.3
4,082,030	-		MIT1002_03648	0.29	-1.9
4,082,174	+		MIT1002_03648	0.47	-0.2
4,082,176	+		MIT1002_03648	0.47	+0.7
4,082,184	-		MIT1002_03648	0.49	+1.0
4,082,201	+		MIT1002_03648	0.51	-3.0
4,082,235	+		MIT1002_03648	0.55	-0.3
4,082,291	-		MIT1002_03648	0.62	+3.0
4,082,343	+		MIT1002_03648	0.69	+0.9
4,082,368	-		MIT1002_03648	0.72	-0.7
4,082,392	+		MIT1002_03648	0.75	+0.5
4,082,400	-		MIT1002_03648	0.77	+0.4
4,082,415	+		MIT1002_03648	0.78	+0.4
4,082,447	-		MIT1002_03648	0.83	-2.6
4,082,470	-		MIT1002_03648	0.86	+0.4
4,082,477	+		MIT1002_03648	0.87	+0.8
4,082,542	-				-2.2
4,082,543	+				-1.3
4,082,549	+				-2.4
4,082,587	-				+0.8
4,082,624	+				+0.9
4,082,624	+				+0.7
4,082,668	-				-1.1
4,082,705	-		MIT1002_03649	0.10	-1.4
4,082,706	+		MIT1002_03649	0.10	-1.9
4,082,762	-		MIT1002_03649	0.16	-0.2
4,082,848	+		MIT1002_03649	0.24	-1.2
4,082,851	-		MIT1002_03649	0.24	-1.2
4,082,861	-		MIT1002_03649	0.25	-0.3
4,082,867	-		MIT1002_03649	0.26	-1.7
4,082,867	-		MIT1002_03649	0.26	-2.9
4,083,164	+		MIT1002_03649	0.54	-1.4
4,083,169	+		MIT1002_03649	0.54	+1.3
4,083,172	-		MIT1002_03649	0.54	+0.2
4,083,242	+		MIT1002_03649	0.61	-1.8
4,083,242	+		MIT1002_03649	0.61	+0.5
4,083,244	-		MIT1002_03649	0.61	+0.2
4,083,250	-		MIT1002_03649	0.62	+0.6
4,083,250	-		MIT1002_03649	0.62	+0.2
4,083,250	-		MIT1002_03649	0.62	-3.1
4,083,250	-		MIT1002_03649	0.62	-0.8
4,083,306	+		MIT1002_03649	0.67	+0.2
4,083,314	-		MIT1002_03649	0.68	-1.8
4,083,321	+		MIT1002_03649	0.68	+0.2
4,083,339	+		MIT1002_03649	0.70	-0.6
4,083,340	-		MIT1002_03649	0.70	-0.5
4,083,404	+		MIT1002_03649	0.76	-0.5
4,083,436	+		MIT1002_03649	0.79	-1.8
4,083,436	+		MIT1002_03649	0.79	+0.6
4,083,444	-		MIT1002_03649	0.80	+1.8
4,083,444	-		MIT1002_03649	0.80	+1.1
4,083,521	-		MIT1002_03649	0.87	-0.4
4,083,594	-				-0.6
4,083,594	-				+1.3
4,083,594	-				+0.7
4,083,598	+				-1.7
4,083,598	+				-0.1
4,083,598	+				-0.4
4,083,635	-				+2.1
4,083,635	-				-0.7
4,083,645	-				+1.2
4,083,648	+				+0.7
4,083,656	-				-1.3
4,083,692	-				+0.3
4,083,720	+				+2.4
4,083,771	-		MIT1002_03650	0.12	+0.8
4,083,886	-		MIT1002_03650	0.24	-1.0
4,083,886	-		MIT1002_03650	0.24	-0.2
4,083,886	-		MIT1002_03650	0.24	-0.3
4,083,893	+		MIT1002_03650	0.25	+1.2
4,083,915	+		MIT1002_03650	0.27	+0.6
4,083,937	+		MIT1002_03650	0.30	-0.9
4,083,945	-		MIT1002_03650	0.31	+0.7
4,083,954	+		MIT1002_03650	0.32	+0.0
4,083,962	-		MIT1002_03650	0.32	+0.6
4,084,309	+		MIT1002_03650	0.69	+0.8
4,084,318	-		MIT1002_03650	0.70	-1.9
4,084,329	-		MIT1002_03650	0.71	+0.5
4,084,329	-		MIT1002_03650	0.71	+0.3
4,084,329	-		MIT1002_03650	0.71	+1.1
4,084,390	+		MIT1002_03650	0.77	-2.6
4,084,468	+		MIT1002_03650	0.86	-1.5
4,084,501	+		MIT1002_03650	0.89	-1.4
4,084,514	-				-3.5
4,084,543	-				-2.0
4,084,608	+				+1.1
4,084,647	-				+0.0