Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03645

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
4,077,263	+		MIT1002_03644	0.28	-0.5
4,077,263	+		MIT1002_03644	0.28	-0.9
4,077,271	-		MIT1002_03644	0.29	+0.2
4,077,284	+		MIT1002_03644	0.30	+0.1
4,077,285	-		MIT1002_03644	0.30	+0.6
4,077,382	+		MIT1002_03644	0.38	+0.1
4,077,382	+		MIT1002_03644	0.38	+0.3
4,077,553	+		MIT1002_03644	0.51	+0.2
4,077,553	+		MIT1002_03644	0.51	+1.0
4,077,561	-		MIT1002_03644	0.52	-1.6
4,077,561	-		MIT1002_03644	0.52	-0.3
4,077,561	-		MIT1002_03644	0.52	+0.7
4,077,561	-		MIT1002_03644	0.52	-0.3
4,077,568	+		MIT1002_03644	0.53	+0.7
4,077,573	+		MIT1002_03644	0.53	+1.1
4,077,573	+		MIT1002_03644	0.53	-3.6
4,077,576	-		MIT1002_03644	0.53	+0.2
4,077,578	+		MIT1002_03644	0.53	-0.4
4,077,578	+		MIT1002_03644	0.53	+0.8
4,077,581	-		MIT1002_03644	0.54	-1.0
4,077,586	-		MIT1002_03644	0.54	+0.1
4,077,746	+		MIT1002_03644	0.67	-1.8
4,077,746	+		MIT1002_03644	0.67	-1.4
4,077,757	-		MIT1002_03644	0.68	+1.4
4,077,827	+		MIT1002_03644	0.73	+0.1
4,077,830	-		MIT1002_03644	0.73	-0.5
4,077,837	+		MIT1002_03644	0.74	+0.4
4,077,847	+		MIT1002_03644	0.75	+1.9
4,077,871	-		MIT1002_03644	0.77	+0.2
4,078,109	+				+0.2
4,078,126	+				-0.2
4,078,159	-				+1.0
4,078,233	+				-0.6
4,078,234	-				-0.2
4,078,347	+				-0.2
4,078,375	+				+0.8
4,078,383	-				-0.8
4,078,416	+		MIT1002_03645	0.12	+0.0
4,078,422	-		MIT1002_03645	0.12	+1.1
4,078,436	+		MIT1002_03645	0.13	-0.1
4,078,506	-		MIT1002_03645	0.18	+0.1
4,078,518	-		MIT1002_03645	0.19	+0.6
4,078,622	-		MIT1002_03645	0.26	+0.5
4,078,629	+		MIT1002_03645	0.27	+0.4
4,078,637	-		MIT1002_03645	0.27	-1.4
4,078,655	-		MIT1002_03645	0.29	+1.8
4,078,665	-		MIT1002_03645	0.29	+0.5
4,078,691	+		MIT1002_03645	0.31	+0.3
4,078,699	-		MIT1002_03645	0.32	+1.4
4,078,928	+		MIT1002_03645	0.47	-0.2
4,079,099	-		MIT1002_03645	0.59	+0.7
4,079,151	-		MIT1002_03645	0.63	+0.4
4,079,181	+		MIT1002_03645	0.65	-1.1
4,079,199	-		MIT1002_03645	0.66	+1.9
4,079,209	+		MIT1002_03645	0.67	+1.7
4,079,217	-		MIT1002_03645	0.67	+0.6
4,079,230	-		MIT1002_03645	0.68	-1.7
4,079,234	-		MIT1002_03645	0.68	+0.8
4,079,254	+		MIT1002_03645	0.70	-2.6
4,079,254	+		MIT1002_03645	0.70	+1.4
4,079,262	-		MIT1002_03645	0.70	+0.7
4,079,297	-		MIT1002_03645	0.73	+0.4
4,079,322	+		MIT1002_03645	0.75	+0.5
4,079,364	+		MIT1002_03645	0.77	+1.8
4,079,381	-		MIT1002_03645	0.79	+1.5
4,079,402	-		MIT1002_03645	0.80	+0.2
4,079,471	+		MIT1002_03645	0.85	+0.0
4,079,471	+		MIT1002_03645	0.85	+0.3
4,079,479	-		MIT1002_03645	0.85	+0.5
4,079,479	-		MIT1002_03645	0.85	+0.2
4,079,493	-		MIT1002_03645	0.86	-0.3
4,079,509	+		MIT1002_03645	0.87	+1.7
4,079,527	-		MIT1002_03645	0.89	+1.6
4,079,564	+				+0.1
4,079,564	+				-0.4
4,079,572	-				+1.5
4,079,693	-				-2.7
4,079,694	+				+0.4
4,079,709	+				-1.2
4,079,717	-				-0.0
4,079,825	+				-0.3
4,079,825	+				-0.5
4,079,832	+				-0.4
4,079,832	+				+1.6
4,079,833	-				+0.1
4,079,833	-				-0.4
4,080,014	-		MIT1002_03646	0.16	-0.1
4,080,014	-		MIT1002_03646	0.16	+1.0
4,080,109	+		MIT1002_03646	0.21	+0.3
4,080,109	+		MIT1002_03646	0.21	+2.3
4,080,117	-		MIT1002_03646	0.21	-0.8
4,080,275	-		MIT1002_03646	0.29	+0.0
4,080,275	-		MIT1002_03646	0.29	-0.6
4,080,307	+		MIT1002_03646	0.31	-0.7
4,080,308	+		MIT1002_03646	0.31	+1.1
4,080,377	+		MIT1002_03646	0.34	-1.3
4,080,377	+		MIT1002_03646	0.34	-1.4
4,080,385	-		MIT1002_03646	0.34	+1.0
4,080,407	-		MIT1002_03646	0.36	-1.9
4,080,420	+		MIT1002_03646	0.36	+0.3
4,080,445	+		MIT1002_03646	0.37	+1.0
4,080,453	-		MIT1002_03646	0.38	-0.2
4,080,604	+		MIT1002_03646	0.45	-3.5
4,080,617	-		MIT1002_03646	0.46	-1.0