Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03559

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_03557 and MIT1002_03558 are separated by 37 nucleotidesMIT1002_03558 and MIT1002_03559 are separated by 58 nucleotidesMIT1002_03559 and MIT1002_03560 are separated by 75 nucleotides MIT1002_03557: MIT1002_03557 - dTDP-glucose 4,6-dehydratase, at 3,981,866 to 3,982,948 _03557 MIT1002_03558: MIT1002_03558 - dTDP-4-dehydrorhamnose reductase, at 3,982,986 to 3,983,855 _03558 MIT1002_03559: MIT1002_03559 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 3,983,914 to 3,984,459 _03559 MIT1002_03560: MIT1002_03560 - Glucose-1-phosphate thymidylyltransferase 1, at 3,984,535 to 3,985,416 _03560 Position (kb) 3983 3984 3985Strain fitness (log2 ratio) -2 -1 0 1at 3983.798 kb on - strandat 3984.569 kb on - strandat 3984.761 kb on - strand, within MIT1002_03560

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
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3,983,798 - -1.6
3,984,569 - +0.9
3,984,761 - MIT1002_03560 0.26 -2.2

Or see this region's nucleotide sequence