Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03436

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
3,838,367	-		MIT1002_03435	0.32	-0.3
3,838,367	-		MIT1002_03435	0.32	+0.2
3,838,383	+		MIT1002_03435	0.33	+0.2
3,838,383	+		MIT1002_03435	0.33	-0.9
3,838,383	+		MIT1002_03435	0.33	-0.3
3,838,383	+		MIT1002_03435	0.33	-0.0
3,838,391	-		MIT1002_03435	0.34	-0.8
3,838,391	-		MIT1002_03435	0.34	-1.2
3,838,391	-		MIT1002_03435	0.34	+1.1
3,838,393	+		MIT1002_03435	0.34	-1.5
3,838,401	-		MIT1002_03435	0.35	+1.1
3,838,417	+		MIT1002_03435	0.36	-2.3
3,838,425	-		MIT1002_03435	0.36	-0.4
3,838,469	-		MIT1002_03435	0.40	-1.1
3,838,489	+		MIT1002_03435	0.41	+0.0
3,838,506	+		MIT1002_03435	0.42	-0.7
3,838,561	+		MIT1002_03435	0.46	+0.0
3,838,561	+		MIT1002_03435	0.46	-0.1
3,838,580	+		MIT1002_03435	0.47	+1.7
3,838,580	+		MIT1002_03435	0.47	-1.9
3,838,581	+		MIT1002_03435	0.47	-1.2
3,838,589	-		MIT1002_03435	0.48	+0.6
3,838,675	+		MIT1002_03435	0.54	-0.4
3,838,811	+		MIT1002_03435	0.64	+0.9
3,838,819	+		MIT1002_03435	0.64	-0.1
3,838,901	-		MIT1002_03435	0.70	+0.4
3,838,901	-		MIT1002_03435	0.70	-0.8
3,838,901	-		MIT1002_03435	0.70	-2.2
3,838,987	-		MIT1002_03435	0.76	+0.5
3,838,987	-		MIT1002_03435	0.76	-1.7
3,839,055	+		MIT1002_03435	0.81	-2.8
3,839,062	-		MIT1002_03435	0.82	-0.3
3,839,063	-		MIT1002_03435	0.82	+1.5
3,839,068	+		MIT1002_03435	0.82	+1.1
3,839,075	+		MIT1002_03435	0.82	-2.0
3,839,083	-		MIT1002_03435	0.83	+0.5
3,839,116	+		MIT1002_03435	0.85	-0.3
3,839,137	-		MIT1002_03435	0.87	-0.6
3,839,146	+		MIT1002_03435	0.87	-0.1
3,839,156	+		MIT1002_03435	0.88	-1.4
3,839,158	+		MIT1002_03435	0.88	-2.2
3,839,190	+				+0.7
3,839,265	-				+0.7
3,839,359	+				-0.6
3,839,367	-				-0.1
3,839,403	+				+1.2
3,839,411	-				-2.5
3,839,418	+				-0.7
3,839,418	+				-0.4
3,839,426	+				+0.4
3,839,476	-				+0.9
3,839,521	-				+0.1
3,839,621	+		MIT1002_03436	0.11	+0.5
3,839,686	-		MIT1002_03436	0.13	-2.3
3,839,711	+		MIT1002_03436	0.14	-0.1
3,839,721	+		MIT1002_03436	0.15	+0.3
3,839,721	+		MIT1002_03436	0.15	+0.1
3,839,721	+		MIT1002_03436	0.15	+0.2
3,839,721	+		MIT1002_03436	0.15	-1.8
3,839,721	+		MIT1002_03436	0.15	+0.2
3,839,721	+		MIT1002_03436	0.15	+0.2
3,839,724	+		MIT1002_03436	0.15	+1.1
3,839,729	-		MIT1002_03436	0.15	-1.3
3,839,729	-		MIT1002_03436	0.15	+0.1
3,839,729	-		MIT1002_03436	0.15	-1.5
3,839,764	-		MIT1002_03436	0.17	-0.9
3,839,781	+		MIT1002_03436	0.17	-0.1
3,839,789	-		MIT1002_03436	0.18	+0.6
3,839,789	-		MIT1002_03436	0.18	+1.8
3,839,831	-		MIT1002_03436	0.19	+0.6
3,839,837	-		MIT1002_03436	0.20	+0.1
3,839,939	+		MIT1002_03436	0.24	+0.6
3,839,944	+		MIT1002_03436	0.24	-0.6
3,839,952	-		MIT1002_03436	0.24	-0.7
3,839,952	-		MIT1002_03436	0.24	+0.9
3,839,952	-		MIT1002_03436	0.24	+0.1
3,839,952	-		MIT1002_03436	0.24	+0.8
3,839,956	+		MIT1002_03436	0.25	+1.1
3,839,956	+		MIT1002_03436	0.25	-0.1
3,839,966	+		MIT1002_03436	0.25	+1.0
3,839,969	-		MIT1002_03436	0.25	+0.3
3,839,971	+		MIT1002_03436	0.25	-0.4
3,839,999	-		MIT1002_03436	0.26	-2.0
3,839,999	-		MIT1002_03436	0.26	+0.8
3,840,055	-		MIT1002_03436	0.29	-0.4
3,840,066	+		MIT1002_03436	0.29	+0.5
3,840,068	-		MIT1002_03436	0.29	-2.4
3,840,091	-		MIT1002_03436	0.30	+0.9
3,840,091	-		MIT1002_03436	0.30	+1.2
3,840,091	-		MIT1002_03436	0.30	+0.1
3,840,114	+		MIT1002_03436	0.31	+2.0
3,840,122	-		MIT1002_03436	0.31	-1.2
3,840,153	-		MIT1002_03436	0.33	+0.2
3,840,289	+		MIT1002_03436	0.38	+1.1
3,840,320	+		MIT1002_03436	0.40	-0.4
3,840,328	-		MIT1002_03436	0.40	-2.0
3,840,435	+		MIT1002_03436	0.44	-3.2
3,840,466	+		MIT1002_03436	0.46	+0.6
3,840,509	-		MIT1002_03436	0.47	-0.1
3,840,610	-		MIT1002_03436	0.51	-0.9
3,840,620	-		MIT1002_03436	0.52	+1.4
3,840,706	+		MIT1002_03436	0.55	-0.7
3,840,789	+		MIT1002_03436	0.59	-2.4
3,840,816	+		MIT1002_03436	0.60	-0.0
3,840,816	+		MIT1002_03436	0.60	+0.1
3,840,816	+		MIT1002_03436	0.60	-0.6
3,840,884	-		MIT1002_03436	0.63	+2.3
3,840,908	-		MIT1002_03436	0.64	-1.2
3,840,908	-		MIT1002_03436	0.64	+0.7
3,841,147	+		MIT1002_03436	0.74	+0.8
3,841,160	-		MIT1002_03436	0.74	+1.1
3,841,161	+		MIT1002_03436	0.74	-1.3
3,841,171	+		MIT1002_03436	0.75	-0.2
3,841,171	+		MIT1002_03436	0.75	+0.7
3,841,177	-		MIT1002_03436	0.75	+1.2
3,841,177	-		MIT1002_03436	0.75	+0.4
3,841,251	+		MIT1002_03436	0.78	+1.6
3,841,282	+		MIT1002_03436	0.79	+3.1
3,841,290	-		MIT1002_03436	0.80	+0.3
3,841,421	+		MIT1002_03436	0.85	+1.4
3,841,571	+				+0.2
3,841,573	+				-0.8
3,841,616	-				+0.6
3,841,616	-				-0.0
3,841,699	-				+1.3
3,841,708	+				+1.2
3,841,722	+				+0.7
3,841,794	+				+0.9
3,841,802	-				+1.0
3,841,828	-				+1.1
3,841,828	-				-1.2
3,841,828	-				-0.3
3,841,868	+				+0.2
3,841,876	-				+0.4
3,841,876	-				+0.2
3,841,913	-		MIT1002_03437	0.12	+1.5
3,841,922	-		MIT1002_03437	0.13	+2.1
3,841,941	-		MIT1002_03437	0.14	+0.0
3,841,941	-		MIT1002_03437	0.14	+1.4
3,841,985	-		MIT1002_03437	0.18	+0.1
3,842,019	-		MIT1002_03437	0.21	-0.0
3,842,062	+		MIT1002_03437	0.25	-1.3
3,842,070	-		MIT1002_03437	0.26	+0.6
3,842,107	-		MIT1002_03437	0.29	-0.7
3,842,261	+		MIT1002_03437	0.43	-1.8
3,842,269	-		MIT1002_03437	0.44	+0.2
3,842,271	+		MIT1002_03437	0.44	+0.1
3,842,281	+		MIT1002_03437	0.45	+2.4
3,842,290	+		MIT1002_03437	0.46	+1.4
3,842,341	-		MIT1002_03437	0.50	-1.4
3,842,396	+		MIT1002_03437	0.55	-0.2
3,842,396	+		MIT1002_03437	0.55	+0.4
3,842,397	-		MIT1002_03437	0.56	+0.2
3,842,404	-		MIT1002_03437	0.56	+0.2
3,842,472	-		MIT1002_03437	0.62	-0.6
3,842,531	-		MIT1002_03437	0.68	-0.8
3,842,651	+		MIT1002_03437	0.79	-0.6
3,842,659	-		MIT1002_03437	0.79	+2.1
3,842,708	-		MIT1002_03437	0.84	-1.4
3,842,772	+		MIT1002_03437	0.89	+0.2
3,842,780	+				-0.2