Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03429

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
3,830,905	-		MIT1002_03427	0.47	-0.4
3,830,958	-		MIT1002_03427	0.54	-0.4
3,830,979	+		MIT1002_03427	0.57	+1.8
3,831,057	+		MIT1002_03427	0.67	-1.9
3,831,119	-		MIT1002_03427	0.76	-0.2
3,831,142	+		MIT1002_03427	0.79	+1.0
3,831,165	+		MIT1002_03427	0.82	+0.6
3,831,187	-		MIT1002_03427	0.85	+0.0
3,831,208	+		MIT1002_03427	0.88	+0.3
3,831,208	+		MIT1002_03427	0.88	-2.3
3,831,216	-		MIT1002_03427	0.89	+3.9
3,831,216	-		MIT1002_03427	0.89	-3.3
3,831,222	+				-0.9
3,831,230	-				+0.1
3,831,246	+				-0.4
3,831,264	-				-0.3
3,831,294	+				+0.5
3,831,381	+		MIT1002_03428	0.25	-0.5
3,831,389	-		MIT1002_03428	0.27	+2.8
3,831,427	+		MIT1002_03428	0.37	-1.0
3,831,492	-		MIT1002_03428	0.53	+1.1
3,831,500	-		MIT1002_03428	0.55	+1.7
3,831,500	-		MIT1002_03428	0.55	+0.9
3,831,526	-		MIT1002_03428	0.62	+1.0
3,831,662	-				-0.3
3,831,707	+				+0.6
3,831,707	+				+0.2
3,831,715	-				-1.3
3,831,766	+				+0.0
3,831,843	+				+0.2
3,831,848	+				-2.0
3,831,848	+				+1.6
3,831,848	+				+0.3
3,831,849	-				-2.3
3,831,851	-				+1.3
3,831,866	-				+0.5
3,831,873	-				-0.7
3,831,882	+				+0.9
3,831,900	-				+0.2
3,831,940	+				-3.0
3,831,940	+				+1.3
3,831,940	+				+0.2
3,832,045	-		MIT1002_03429	0.26	+0.1
3,832,098	+		MIT1002_03429	0.36	+0.1
3,832,098	+		MIT1002_03429	0.36	-0.4
3,832,133	+		MIT1002_03429	0.42	-0.5
3,832,138	+		MIT1002_03429	0.43	+0.6
3,832,143	+		MIT1002_03429	0.44	+0.3
3,832,143	+		MIT1002_03429	0.44	-2.0
3,832,143	+		MIT1002_03429	0.44	-1.1
3,832,143	+		MIT1002_03429	0.44	-0.5
3,832,143	+		MIT1002_03429	0.44	-0.9
3,832,143	+		MIT1002_03429	0.44	-0.4
3,832,143	+		MIT1002_03429	0.44	+0.6
3,832,143	+		MIT1002_03429	0.44	+0.7
3,832,143	+		MIT1002_03429	0.44	+0.3
3,832,143	+		MIT1002_03429	0.44	-1.6
3,832,143	+		MIT1002_03429	0.44	+0.2
3,832,143	+		MIT1002_03429	0.44	-2.0
3,832,143	+		MIT1002_03429	0.44	-0.0
3,832,143	+		MIT1002_03429	0.44	+0.1
3,832,143	+		MIT1002_03429	0.44	-1.0
3,832,143	+		MIT1002_03429	0.44	+0.2
3,832,143	+		MIT1002_03429	0.44	-2.4
3,832,143	+		MIT1002_03429	0.44	-3.6
3,832,143	+		MIT1002_03429	0.44	-1.8
3,832,143	+		MIT1002_03429	0.44	-3.5
3,832,146	-		MIT1002_03429	0.45	+3.1
3,832,151	-		MIT1002_03429	0.46	-1.0
3,832,151	-		MIT1002_03429	0.46	-2.0
3,832,151	-		MIT1002_03429	0.46	-0.4
3,832,151	-		MIT1002_03429	0.46	+0.5
3,832,151	-		MIT1002_03429	0.46	-0.0
3,832,151	-		MIT1002_03429	0.46	+1.0
3,832,151	-		MIT1002_03429	0.46	-1.2
3,832,151	-		MIT1002_03429	0.46	-2.5
3,832,151	-		MIT1002_03429	0.46	+0.9
3,832,151	-		MIT1002_03429	0.46	-0.2
3,832,151	-		MIT1002_03429	0.46	-0.4
3,832,151	-		MIT1002_03429	0.46	-2.7
3,832,151	-		MIT1002_03429	0.46	-1.8
3,832,151	-		MIT1002_03429	0.46	-1.0
3,832,151	-		MIT1002_03429	0.46	-3.8
3,832,151	-		MIT1002_03429	0.46	-0.4
3,832,151	-		MIT1002_03429	0.46	-1.4
3,832,151	-		MIT1002_03429	0.46	-0.3
3,832,151	-		MIT1002_03429	0.46	+0.3
3,832,151	-		MIT1002_03429	0.46	-0.7
3,832,151	-		MIT1002_03429	0.46	-0.3
3,832,151	-		MIT1002_03429	0.46	-0.3
3,832,151	-		MIT1002_03429	0.46	+1.8
3,832,151	-		MIT1002_03429	0.46	-0.6
3,832,151	-		MIT1002_03429	0.46	-0.4
3,832,153	+		MIT1002_03429	0.46	-1.0
3,832,153	+		MIT1002_03429	0.46	-1.0
3,832,153	+		MIT1002_03429	0.46	+0.2
3,832,153	+		MIT1002_03429	0.46	+1.8
3,832,161	-		MIT1002_03429	0.47	-1.9
3,832,161	-		MIT1002_03429	0.47	-1.2
3,832,161	-		MIT1002_03429	0.47	+1.3
3,832,161	-		MIT1002_03429	0.47	-1.2
3,832,172	+		MIT1002_03429	0.49	-2.1
3,832,184	+		MIT1002_03429	0.52	-2.7
3,832,192	-		MIT1002_03429	0.53	-2.1
3,832,194	-		MIT1002_03429	0.53	-2.0
3,832,267	+		MIT1002_03429	0.67	+0.5
3,832,278	+		MIT1002_03429	0.69	-0.4
3,832,286	-		MIT1002_03429	0.70	-1.8
3,832,286	-		MIT1002_03429	0.70	+0.2
3,832,286	-		MIT1002_03429	0.70	-0.7
3,832,320	-		MIT1002_03429	0.77	-1.0
3,832,374	+		MIT1002_03429	0.86	-1.0
3,832,413	-				-0.6
3,832,422	+				-1.1
3,832,422	+				-0.4
3,832,430	-				-3.1
3,832,486	+				-1.9
3,832,585	+				-0.2
3,832,701	-		MIT1002_03430	0.14	-0.1
3,832,715	+		MIT1002_03430	0.15	-0.1
3,832,723	-		MIT1002_03430	0.16	-2.4
3,832,780	-		MIT1002_03430	0.21	-0.5
3,832,861	+		MIT1002_03430	0.28	+2.2
3,832,871	+		MIT1002_03430	0.29	+0.1
3,832,929	+		MIT1002_03430	0.34	+0.3
3,832,929	+		MIT1002_03430	0.34	+0.6
3,832,974	-		MIT1002_03430	0.38	-1.0
3,833,015	-		MIT1002_03430	0.42	+0.6
3,833,048	+		MIT1002_03430	0.44	+0.4
3,833,075	-		MIT1002_03430	0.47	+0.0
3,833,115	+		MIT1002_03430	0.50	+3.0
3,833,201	-		MIT1002_03430	0.58	+1.4
3,833,232	+		MIT1002_03430	0.61	-0.4
3,833,253	-		MIT1002_03430	0.63	-0.6
3,833,395	+		MIT1002_03430	0.75	+0.8
3,833,437	+		MIT1002_03430	0.79	-1.1
3,833,447	-		MIT1002_03430	0.80	+1.1