Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03424

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
3,825,919	-		MIT1002_03422	0.72	+0.3
3,825,928	+		MIT1002_03422	0.72	+0.0
3,825,946	-		MIT1002_03422	0.74	-0.3
3,825,946	-		MIT1002_03422	0.74	+0.0
3,826,043	+		MIT1002_03422	0.81	-0.4
3,826,140	+		MIT1002_03422	0.88	+0.5
3,826,148	-		MIT1002_03422	0.89	-0.5
3,826,264	-				+0.1
3,826,378	-				-1.0
3,826,395	-		MIT1002_03423	0.12	-2.8
3,826,517	-		MIT1002_03423	0.76	-0.5
3,826,545	+				-2.4
3,826,632	+				+0.5
3,826,708	+				+0.5
3,826,802	-				-0.5
3,826,849	+				-1.1
3,826,857	-				-1.5
3,826,949	+				-2.8
3,826,968	+				+2.5
3,827,034	-		MIT1002_03424	0.15	+0.2
3,827,149	-		MIT1002_03424	0.29	-0.1
3,827,159	-		MIT1002_03424	0.30	+0.6
3,827,196	-		MIT1002_03424	0.34	+0.9
3,827,196	-		MIT1002_03424	0.34	+0.7
3,827,251	-		MIT1002_03424	0.41	+0.6
3,827,315	-		MIT1002_03424	0.49	-0.5
3,827,402	-		MIT1002_03424	0.59	+0.0
3,827,608	+		MIT1002_03424	0.84	-1.4
3,827,608	+		MIT1002_03424	0.84	+1.6
3,827,608	+		MIT1002_03424	0.84	+0.5
3,827,608	+		MIT1002_03424	0.84	-0.3
3,827,616	-		MIT1002_03424	0.85	-0.2
3,827,616	-		MIT1002_03424	0.85	+0.5
3,827,625	-		MIT1002_03424	0.86	+1.0
3,827,676	+				-1.4
3,827,747	+				+1.3
3,827,815	+				-1.3
3,827,823	-				-1.4
3,827,823	-				+0.6
3,827,845	+				-1.6
3,827,877	+				-3.0
3,827,877	+				+1.1
3,827,883	-				+0.5
3,827,885	-				-1.2
3,827,890	-				+0.7
3,827,897	+				-0.0
3,827,961	-				-0.3
3,827,987	-				-0.5
3,828,039	-		MIT1002_03425	0.16	+0.2
3,828,077	-		MIT1002_03425	0.21	+0.6
3,828,106	+		MIT1002_03425	0.24	-0.0
3,828,167	+		MIT1002_03425	0.32	+0.8
3,828,197	+		MIT1002_03425	0.36	-1.7
3,828,197	+		MIT1002_03425	0.36	-3.9
3,828,205	-		MIT1002_03425	0.37	-0.7
3,828,205	-		MIT1002_03425	0.37	-0.8
3,828,205	-		MIT1002_03425	0.37	+2.7
3,828,205	-		MIT1002_03425	0.37	+0.9
3,828,225	-		MIT1002_03425	0.39	+0.8
3,828,233	+		MIT1002_03425	0.40	+1.9
3,828,278	+		MIT1002_03425	0.46	+0.4
3,828,278	+		MIT1002_03425	0.46	+0.8
3,828,278	+		MIT1002_03425	0.46	+0.3
3,828,286	-		MIT1002_03425	0.46	-3.1
3,828,286	-		MIT1002_03425	0.46	-0.1
3,828,289	-		MIT1002_03425	0.47	-1.4
3,828,347	-		MIT1002_03425	0.54	-0.2
3,828,400	-		MIT1002_03425	0.61	+0.6
3,828,422	+		MIT1002_03425	0.63	-0.0
3,828,554	-		MIT1002_03425	0.79	-3.6
3,828,596	-		MIT1002_03425	0.85	-0.7
3,828,666	-				+0.9
3,828,666	-				+0.1
3,828,671	-				-2.1
3,828,671	-				-1.0
3,828,673	+				+0.7
3,828,699	-				+1.5