Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03393

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
3,794,020	-				-0.8
3,794,179	-		MIT1002_03392	0.18	-0.5
3,794,207	-		MIT1002_03392	0.22	+0.8
3,794,207	-		MIT1002_03392	0.22	-0.3
3,794,287	-		MIT1002_03392	0.31	+1.5
3,794,297	+		MIT1002_03392	0.32	+0.2
3,794,299	+		MIT1002_03392	0.32	+0.6
3,794,338	+		MIT1002_03392	0.36	+0.2
3,794,433	+		MIT1002_03392	0.47	+3.1
3,794,433	+		MIT1002_03392	0.47	+0.6
3,794,433	+		MIT1002_03392	0.47	+0.3
3,794,544	+		MIT1002_03392	0.59	+1.2
3,794,555	+		MIT1002_03392	0.61	-0.3
3,794,632	-		MIT1002_03392	0.69	+0.2
3,794,655	+		MIT1002_03392	0.72	+1.1
3,794,663	-		MIT1002_03392	0.73	-0.4
3,794,669	-		MIT1002_03392	0.73	-1.0
3,794,686	+		MIT1002_03392	0.75	-2.4
3,794,687	-		MIT1002_03392	0.75	-1.1
3,794,693	-		MIT1002_03392	0.76	-0.3
3,794,694	-		MIT1002_03392	0.76	-0.4
3,794,722	+		MIT1002_03392	0.79	-0.3
3,794,826	-				-1.2
3,794,826	-				-1.4
3,794,828	+				+1.4
3,794,836	-				-0.3
3,794,879	-				-0.0
3,794,909	-				+0.5
3,794,971	+				+0.3
3,794,972	-				-0.0
3,794,998	-				+1.1
3,795,007	-				-0.6
3,795,012	-				+2.7
3,795,018	+				+0.5
3,795,018	+				-1.6
3,795,018	+				+1.0
3,795,019	+				-1.1
3,795,026	-				-1.2
3,795,026	-				+0.7
3,795,026	-				-2.7
3,795,049	+		MIT1002_03393	0.12	+1.4
3,795,165	-		MIT1002_03393	0.21	+0.5
3,795,258	-		MIT1002_03393	0.28	-0.6
3,795,284	+		MIT1002_03393	0.30	+0.8
3,795,285	+		MIT1002_03393	0.30	-1.7
3,795,316	+		MIT1002_03393	0.32	+1.9
3,795,359	+		MIT1002_03393	0.36	-0.6
3,795,365	+		MIT1002_03393	0.36	+2.6
3,795,373	+		MIT1002_03393	0.37	-0.6
3,795,373	-		MIT1002_03393	0.37	-0.1
3,795,388	+		MIT1002_03393	0.38	-0.5
3,795,455	-		MIT1002_03393	0.43	-0.2
3,795,513	+		MIT1002_03393	0.48	+0.4
3,795,519	+		MIT1002_03393	0.48	+1.1
3,795,548	+		MIT1002_03393	0.50	+0.0
3,795,637	-		MIT1002_03393	0.57	+1.0
3,795,677	-		MIT1002_03393	0.60	+0.5
3,795,775	+		MIT1002_03393	0.68	+2.2
3,795,778	-		MIT1002_03393	0.68	-0.3
3,795,792	+		MIT1002_03393	0.69	-1.2
3,795,799	-		MIT1002_03393	0.70	-0.1
3,795,799	-		MIT1002_03393	0.70	+0.8
3,795,883	+		MIT1002_03393	0.76	+1.0
3,795,918	+		MIT1002_03393	0.79	+0.5
3,795,972	+		MIT1002_03393	0.83	-0.1
3,796,108	+				+0.0
3,796,151	+				-0.9
3,796,151	+				+0.2
3,796,159	-				+0.7
3,796,159	-				-0.9
3,796,187	+				-0.8
3,796,189	+				-0.7
3,796,198	+				-2.8
3,796,208	-				-0.7
3,796,259	+				+0.6
3,796,314	-				+1.0
3,796,314	-				-0.8
3,796,314	-				+0.1
3,796,470	+		MIT1002_03394	0.19	-1.2
3,796,478	-		MIT1002_03394	0.19	+1.4
3,796,480	+		MIT1002_03394	0.20	+0.3
3,796,568	-		MIT1002_03394	0.25	+1.4
3,796,574	+		MIT1002_03394	0.26	-0.1
3,796,575	+		MIT1002_03394	0.26	-1.7
3,796,620	+		MIT1002_03394	0.29	+0.2
3,796,620	+		MIT1002_03394	0.29	-1.2
3,796,628	-		MIT1002_03394	0.29	+1.1
3,796,628	-		MIT1002_03394	0.29	-1.8
3,796,744	+		MIT1002_03394	0.37	+1.1
3,796,752	-		MIT1002_03394	0.38	-1.2
3,796,820	-		MIT1002_03394	0.42	-2.7
3,796,887	+		MIT1002_03394	0.47	-0.4
3,796,889	-		MIT1002_03394	0.47	-0.1
3,796,895	-		MIT1002_03394	0.47	+1.5
3,796,900	-		MIT1002_03394	0.47	-0.8
3,796,919	+		MIT1002_03394	0.49	+0.5
3,796,947	+		MIT1002_03394	0.51	-0.9
3,796,947	+		MIT1002_03394	0.51	+0.5
3,796,979	+		MIT1002_03394	0.53	+0.0
3,797,020	+		MIT1002_03394	0.55	-0.2
3,797,028	-		MIT1002_03394	0.56	-1.0
3,797,028	-		MIT1002_03394	0.56	-1.6
3,797,125	-		MIT1002_03394	0.62	+0.4