Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03356

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
3,752,533	+				+0.4
3,752,620	+		MIT1002_03354	0.31	-0.6
3,752,698	-		MIT1002_03354	0.52	+0.2
3,752,698	-		MIT1002_03354	0.52	-1.0
3,752,753	-		MIT1002_03354	0.67	-0.9
3,752,765	-		MIT1002_03354	0.71	+0.1
3,752,873	-				+0.4
3,752,877	+				+3.3
3,752,887	-				-0.7
3,753,106	-		MIT1002_03355	0.41	-2.0
3,753,170	-		MIT1002_03355	0.52	+1.2
3,753,224	+		MIT1002_03355	0.61	+0.6
3,753,288	-		MIT1002_03355	0.72	-1.3
3,753,430	+				+0.8
3,753,438	-				-0.4
3,753,463	+				-0.3
3,753,560	+				-1.7
3,753,598	+		MIT1002_03356	0.11	+0.5
3,753,672	+		MIT1002_03356	0.17	-3.1
3,753,723	+		MIT1002_03356	0.20	+1.0
3,753,751	-		MIT1002_03356	0.22	-0.1
3,753,822	-		MIT1002_03356	0.28	-2.8
3,753,925	+		MIT1002_03356	0.36	-3.6
3,753,962	+		MIT1002_03356	0.38	+0.2
3,753,965	-		MIT1002_03356	0.39	+0.3
3,754,008	-		MIT1002_03356	0.42	-1.1
3,754,024	+		MIT1002_03356	0.43	-0.6
3,754,024	+		MIT1002_03356	0.43	-2.0
3,754,123	-		MIT1002_03356	0.50	+0.9
3,754,140	-		MIT1002_03356	0.52	+0.5
3,754,167	+		MIT1002_03356	0.54	-0.6
3,754,200	+		MIT1002_03356	0.56	-1.6
3,754,207	-		MIT1002_03356	0.57	-1.1
3,754,262	+		MIT1002_03356	0.61	+0.2
3,754,319	+		MIT1002_03356	0.65	-1.5
3,754,322	-		MIT1002_03356	0.65	+0.8
3,754,324	+		MIT1002_03356	0.66	-0.1
3,754,327	-		MIT1002_03356	0.66	-1.0
3,754,327	-		MIT1002_03356	0.66	-0.0
3,754,327	-		MIT1002_03356	0.66	-1.2
3,754,332	-		MIT1002_03356	0.66	-0.4
3,754,332	-		MIT1002_03356	0.66	-2.2
3,754,383	+		MIT1002_03356	0.70	-0.9
3,754,383	+		MIT1002_03356	0.70	-0.6
3,754,383	+		MIT1002_03356	0.70	-0.8
3,754,383	+		MIT1002_03356	0.70	-0.8
3,754,383	+		MIT1002_03356	0.70	-1.3
3,754,391	-		MIT1002_03356	0.71	+1.5
3,754,391	-		MIT1002_03356	0.71	+1.2
3,754,391	-		MIT1002_03356	0.71	+0.2
3,754,392	-		MIT1002_03356	0.71	-1.4
3,754,392	-		MIT1002_03356	0.71	+2.4
3,754,428	-		MIT1002_03356	0.73	-0.3
3,754,461	+		MIT1002_03356	0.76	-1.9
3,754,527	-		MIT1002_03356	0.81	-0.2
3,754,586	+		MIT1002_03356	0.85	-0.8
3,754,586	+		MIT1002_03356	0.85	+0.7
3,754,587	+		MIT1002_03356	0.85	-1.5
3,754,587	+		MIT1002_03356	0.85	+0.1
3,754,592	+		MIT1002_03356	0.86	-1.9
3,754,600	-		MIT1002_03356	0.86	+2.9
3,754,601	-		MIT1002_03356	0.86	-0.1
3,754,609	+		MIT1002_03356	0.87	+1.2
3,754,610	+		MIT1002_03356	0.87	+0.6
3,754,617	-		MIT1002_03356	0.88	-1.3
3,754,645	-		MIT1002_03356	0.90	-0.8
3,754,702	+				+0.1
3,754,714	+				-2.0
3,754,791	+				-0.1
3,754,791	+				+1.0
3,754,791	+				+0.5
3,754,796	+				+0.4
3,754,799	-				+0.7
3,754,799	-				+1.0
3,754,799	-				+1.2
3,754,799	-				+1.1
3,754,799	-				-0.9
3,754,799	-				+0.4
3,754,799	-				-3.8
3,754,801	+				+0.2
3,754,804	-				-0.1
3,754,870	-				-0.2
3,754,879	+				+1.4
3,754,887	-				+0.3
3,754,889	+				-1.0
3,754,896	+				+0.6
3,754,896	+				+2.5
3,754,904	+				+2.8
3,754,953	+				+0.5
3,754,961	-		MIT1002_03357	0.11	+1.6
3,755,024	+		MIT1002_03357	0.17	-2.0
3,755,055	-		MIT1002_03357	0.20	-0.4
3,755,060	-		MIT1002_03357	0.20	-0.0
3,755,106	+		MIT1002_03357	0.25	-1.0
3,755,149	-		MIT1002_03357	0.29	+0.7
3,755,208	-		MIT1002_03357	0.35	+2.0
3,755,208	-		MIT1002_03357	0.35	-2.3
3,755,227	-		MIT1002_03357	0.37	+0.3
3,755,317	+		MIT1002_03357	0.45	-0.0
3,755,325	-		MIT1002_03357	0.46	-0.0
3,755,330	-		MIT1002_03357	0.47	-0.4
3,755,404	-		MIT1002_03357	0.54	-1.9
3,755,477	+		MIT1002_03357	0.61	-2.2
3,755,477	+		MIT1002_03357	0.61	-0.1
3,755,485	-		MIT1002_03357	0.62	+0.7
3,755,554	-		MIT1002_03357	0.68	-0.0
3,755,569	-		MIT1002_03357	0.70	-0.5
3,755,590	+		MIT1002_03357	0.72	+0.6
3,755,623	-		MIT1002_03357	0.75	-0.3
3,755,748	-		MIT1002_03357	0.87	+0.2