Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03255

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
3,626,706	+		MIT1002_03254	0.54	-2.4
3,626,706	+		MIT1002_03254	0.54	-0.5
3,626,708	+		MIT1002_03254	0.54	+0.4
3,626,714	-		MIT1002_03254	0.54	+1.4
3,626,714	-		MIT1002_03254	0.54	-0.6
3,626,782	-		MIT1002_03254	0.59	-0.8
3,626,782	-		MIT1002_03254	0.59	+0.0
3,626,814	-		MIT1002_03254	0.61	+0.3
3,626,899	+		MIT1002_03254	0.67	+1.0
3,627,025	+		MIT1002_03254	0.76	-1.4
3,627,026	+		MIT1002_03254	0.76	-2.0
3,627,034	-		MIT1002_03254	0.76	-2.1
3,627,047	+		MIT1002_03254	0.77	+2.2
3,627,047	+		MIT1002_03254	0.77	-0.3
3,627,057	+		MIT1002_03254	0.78	+1.7
3,627,057	+		MIT1002_03254	0.78	+0.3
3,627,057	+		MIT1002_03254	0.78	-0.5
3,627,090	+		MIT1002_03254	0.80	+1.5
3,627,095	+		MIT1002_03254	0.81	-0.5
3,627,237	-				+3.0
3,627,260	+				+0.2
3,627,260	+				+0.1
3,627,269	-				+0.8
3,627,335	+				+0.0
3,627,373	-				+1.8
3,627,387	+				+1.4
3,627,387	+				+0.9
3,627,422	+				-1.8
3,627,422	+				+3.5
3,627,422	+				+1.4
3,627,422	+				+0.1
3,627,422	+				-1.9
3,627,422	+				-0.4
3,627,422	+				-0.8
3,627,422	+				+1.8
3,627,422	+				-0.8
3,627,422	+				-0.1
3,627,422	+				-3.2
3,627,422	+				+0.8
3,627,422	+				+1.8
3,627,422	+				+0.4
3,627,430	-				+2.0
3,627,430	-				+0.9
3,627,430	-				-0.1
3,627,430	-				+2.0
3,627,430	-				+0.7
3,627,430	-				+0.2
3,627,430	-				-3.1
3,627,430	-				-0.8
3,627,430	-				+0.9
3,627,430	-				+1.1
3,627,430	-				+1.2
3,627,430	-				+0.3
3,627,430	-				-0.6
3,627,430	-				+0.5
3,627,757	-		MIT1002_03255	0.10	-0.3
3,627,770	-		MIT1002_03255	0.12	-0.2
3,627,809	-		MIT1002_03255	0.16	-0.6
3,627,840	+		MIT1002_03255	0.19	+0.6
3,627,924	+		MIT1002_03255	0.27	-1.9
3,627,932	+		MIT1002_03255	0.28	-0.1
3,627,932	+		MIT1002_03255	0.28	+0.9
3,627,932	+		MIT1002_03255	0.28	-0.6
3,627,932	+		MIT1002_03255	0.28	+1.6
3,627,940	+		MIT1002_03255	0.29	-0.1
3,627,969	+		MIT1002_03255	0.31	-0.3
3,627,977	-		MIT1002_03255	0.32	+1.7
3,628,032	-		MIT1002_03255	0.38	+0.8
3,628,032	-		MIT1002_03255	0.38	+0.4
3,628,032	-		MIT1002_03255	0.38	+0.6
3,628,032	-		MIT1002_03255	0.38	+0.3
3,628,057	+		MIT1002_03255	0.40	+1.1
3,628,111	-		MIT1002_03255	0.45	-0.6
3,628,183	+		MIT1002_03255	0.53	-1.0
3,628,191	-		MIT1002_03255	0.53	-1.9
3,628,220	+		MIT1002_03255	0.56	+0.0
3,628,260	+		MIT1002_03255	0.60	+0.6
3,628,260	+		MIT1002_03255	0.60	-0.6
3,628,260	+		MIT1002_03255	0.60	-0.2
3,628,295	-		MIT1002_03255	0.64	+0.4
3,628,318	-		MIT1002_03255	0.66	-0.4
3,628,406	+		MIT1002_03255	0.75	+1.5
3,628,421	+		MIT1002_03255	0.76	-0.2
3,628,421	+		MIT1002_03255	0.76	-0.5
3,628,486	-		MIT1002_03255	0.83	+0.6
3,628,486	-		MIT1002_03255	0.83	-0.1
3,628,519	+		MIT1002_03255	0.86	+1.0
3,628,520	+		MIT1002_03255	0.86	-0.4
3,628,527	-		MIT1002_03255	0.87	-0.0
3,628,527	-		MIT1002_03255	0.87	+0.5
3,628,585	+				+0.0
3,628,595	+				-0.3
3,628,618	+				+0.6
3,628,674	+				+1.2
3,628,750	+				-1.7
3,628,782	-				+0.7
3,628,811	-				-1.2
3,628,819	+				+1.0
3,628,819	+				+0.7
3,628,819	+				+0.2
3,628,819	+				+0.4
3,628,819	+				+1.3
3,628,827	-				+1.0
3,628,837	-				-0.1
3,628,837	-				-2.3
3,628,874	+				-0.9
3,628,874	+				+1.0
3,628,882	-				+0.4
3,628,882	-				+2.2
3,628,934	+		MIT1002_03256	0.16	-0.7
3,628,934	+		MIT1002_03256	0.16	+0.4
3,628,942	-		MIT1002_03256	0.17	+1.0
3,628,942	-		MIT1002_03256	0.17	+0.1
3,628,942	-		MIT1002_03256	0.17	+1.8
3,628,950	-		MIT1002_03256	0.18	+1.2
3,628,976	+		MIT1002_03256	0.22	-0.0
3,628,988	+		MIT1002_03256	0.23	+1.6
3,628,996	-		MIT1002_03256	0.24	-0.3
3,628,996	-		MIT1002_03256	0.24	-3.9
3,629,023	+		MIT1002_03256	0.28	+1.8
3,629,042	-		MIT1002_03256	0.31	-0.4
3,629,077	+		MIT1002_03256	0.35	+1.8
3,629,094	-		MIT1002_03256	0.38	+1.2
3,629,149	-		MIT1002_03256	0.45	-1.0
3,629,187	-		MIT1002_03256	0.50	-0.6
3,629,194	+		MIT1002_03256	0.51	-0.1
3,629,194	+		MIT1002_03256	0.51	+1.0
3,629,194	+		MIT1002_03256	0.51	+0.6
3,629,202	-		MIT1002_03256	0.52	-0.3
3,629,203	-		MIT1002_03256	0.52	+0.4
3,629,213	+		MIT1002_03256	0.54	+1.1
3,629,213	+		MIT1002_03256	0.54	+0.2
3,629,213	+		MIT1002_03256	0.54	+0.4
3,629,222	-		MIT1002_03256	0.55	+1.8
3,629,351	+		MIT1002_03256	0.72	-0.3
3,629,359	-		MIT1002_03256	0.73	-1.1
3,629,361	+		MIT1002_03256	0.73	+1.9
3,629,462	-		MIT1002_03256	0.87	+0.1
3,629,479	+		MIT1002_03256	0.89	+1.1
3,629,544	+				+1.1
3,629,617	-				-0.2
3,629,620	+				+1.9