Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03129

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
3,481,358	-				+0.8
3,481,368	-				-0.3
3,481,380	+				-2.4
3,481,417	-				-1.9
3,481,428	+				-1.0
3,481,453	-				+1.3
3,481,655	+		MIT1002_03128	0.14	-1.6
3,481,655	+		MIT1002_03128	0.14	+0.1
3,481,760	+		MIT1002_03128	0.30	-2.1
3,481,768	-		MIT1002_03128	0.31	-4.3
3,481,789	-		MIT1002_03128	0.34	-1.2
3,481,794	-		MIT1002_03128	0.35	-2.1
3,481,820	-		MIT1002_03128	0.39	-1.8
3,481,831	+		MIT1002_03128	0.40	+0.1
3,481,831	+		MIT1002_03128	0.40	-0.9
3,481,831	+		MIT1002_03128	0.40	-2.5
3,481,831	+		MIT1002_03128	0.40	-0.0
3,481,839	+		MIT1002_03128	0.41	-2.6
3,481,839	+		MIT1002_03128	0.41	-2.8
3,481,839	-		MIT1002_03128	0.41	-1.7
3,481,839	-		MIT1002_03128	0.41	-2.4
3,481,847	-		MIT1002_03128	0.43	-1.3
3,481,847	-		MIT1002_03128	0.43	-2.6
3,481,847	-		MIT1002_03128	0.43	-2.0
3,482,067	+		MIT1002_03128	0.76	+0.0
3,482,112	+		MIT1002_03128	0.83	-1.0
3,482,118	-		MIT1002_03128	0.84	-2.8
3,482,215	+				+0.8
3,482,219	-				-1.3
3,482,221	+				+1.2
3,482,236	+				+1.5
3,482,244	-				-1.0
3,482,371	-				-2.8
3,482,468	-		MIT1002_03129	0.20	-3.6
3,482,500	-		MIT1002_03129	0.24	-3.9
3,482,545	-		MIT1002_03129	0.29	-3.7
3,482,555	-		MIT1002_03129	0.30	-1.6
3,482,555	-		MIT1002_03129	0.30	-3.7
3,482,559	+		MIT1002_03129	0.30	-1.8
3,482,567	-		MIT1002_03129	0.31	-2.0
3,482,654	+		MIT1002_03129	0.41	-0.1
3,482,699	+		MIT1002_03129	0.46	+0.4
3,482,725	-		MIT1002_03129	0.49	-0.4
3,482,775	+		MIT1002_03129	0.55	-1.6
3,482,783	-		MIT1002_03129	0.56	-1.0
3,482,783	-		MIT1002_03129	0.56	-0.8
3,482,783	-		MIT1002_03129	0.56	-3.8
3,482,787	+		MIT1002_03129	0.57	-3.4
3,482,812	-		MIT1002_03129	0.59	-2.1
3,482,869	-		MIT1002_03129	0.66	-4.5
3,482,901	-		MIT1002_03129	0.70	-0.9
3,482,916	-		MIT1002_03129	0.71	-2.8
3,482,984	-		MIT1002_03129	0.79	-0.4
3,483,042	+		MIT1002_03129	0.86	-3.9
3,483,156	+				-1.0
3,483,217	-				+1.6
3,483,225	+				+0.6
3,483,254	-				-2.0
3,483,294	+				-0.1
3,483,302	-				-2.1
3,483,302	-				-0.1
3,483,302	-				-1.3
3,483,306	+				+0.1
3,483,306	+				-0.0
3,483,306	+				+0.1
3,483,314	+				-1.9
3,483,322	-				-1.9
3,483,340	+				+0.7
3,483,353	-				+0.3
3,483,443	-				-3.5
3,483,554	-		MIT1002_03130	0.11	-4.3
3,483,585	-		MIT1002_03130	0.14	-4.2
3,483,593	+		MIT1002_03130	0.15	-3.8
3,483,615	-		MIT1002_03130	0.17	-4.4
3,483,616	-		MIT1002_03130	0.17	-3.5
3,483,738	-		MIT1002_03130	0.28	-3.8
3,483,738	-		MIT1002_03130	0.28	-5.3
3,483,738	-		MIT1002_03130	0.28	-2.7
3,483,738	-		MIT1002_03130	0.28	-3.6
3,483,944	+		MIT1002_03130	0.46	-5.7
3,484,001	-		MIT1002_03130	0.51	-2.8
3,484,011	-		MIT1002_03130	0.52	-1.4
3,484,122	+		MIT1002_03130	0.62	-3.3
3,484,122	+		MIT1002_03130	0.62	-3.0
3,484,129	+		MIT1002_03130	0.62	-5.0
3,484,130	-		MIT1002_03130	0.63	-3.3
3,484,160	+		MIT1002_03130	0.65	-2.9