Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03096

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
3,449,519	+		MIT1002_03094	0.69	+0.1
3,449,654	+		MIT1002_03094	0.83	-0.0
3,449,703	-		MIT1002_03094	0.87	+0.6
3,449,739	-				-1.4
3,449,744	-				-2.3
3,449,748	+				-0.1
3,449,768	-				-0.1
3,449,774	-				-0.5
3,449,926	-				+0.3
3,449,973	+				-0.7
3,450,037	+		MIT1002_03095	0.25	+0.4
3,450,055	-		MIT1002_03095	0.29	-0.6
3,450,055	-		MIT1002_03095	0.29	-0.2
3,450,162	-		MIT1002_03095	0.56	-0.1
3,450,164	+		MIT1002_03095	0.57	+1.2
3,450,197	-		MIT1002_03095	0.65	-2.7
3,450,222	+		MIT1002_03095	0.71	-2.1
3,450,232	+		MIT1002_03095	0.74	-1.1
3,450,308	-				-3.5
3,450,547	-				-5.9
3,450,601	-				-1.4
3,450,622	-				-0.8
3,450,673	+				-4.4
3,450,673	+				-4.6
3,450,673	+				-4.5
3,450,708	-		MIT1002_03096	0.11	-4.4
3,450,772	+		MIT1002_03096	0.15	-0.4
3,450,848	-		MIT1002_03096	0.19	-3.0
3,450,865	+		MIT1002_03096	0.20	-1.3
3,450,930	+		MIT1002_03096	0.24	-6.6
3,450,930	+		MIT1002_03096	0.24	-4.2
3,450,938	-		MIT1002_03096	0.24	-2.0
3,450,950	+		MIT1002_03096	0.25	-5.8
3,450,970	+		MIT1002_03096	0.26	-4.2
3,451,050	+		MIT1002_03096	0.31	-3.2
3,451,106	+		MIT1002_03096	0.34	-5.8
3,451,227	-		MIT1002_03096	0.41	-2.8
3,451,230	+		MIT1002_03096	0.41	-3.4
3,451,238	-		MIT1002_03096	0.42	-3.3
3,451,353	-		MIT1002_03096	0.48	-3.4
3,451,403	+		MIT1002_03096	0.51	-1.6
3,451,411	-		MIT1002_03096	0.52	-3.6
3,451,412	+		MIT1002_03096	0.52	-3.7
3,451,412	+		MIT1002_03096	0.52	-3.5
3,451,420	-		MIT1002_03096	0.52	-5.1
3,451,420	-		MIT1002_03096	0.52	-2.8
3,451,445	+		MIT1002_03096	0.54	-2.6
3,451,453	-		MIT1002_03096	0.54	-4.6
3,451,478	+		MIT1002_03096	0.56	-3.5
3,451,479	+		MIT1002_03096	0.56	-5.1
3,451,489	+		MIT1002_03096	0.56	-1.3
3,451,533	-		MIT1002_03096	0.59	-2.4
3,451,546	-		MIT1002_03096	0.60	-4.3
3,451,566	-		MIT1002_03096	0.61	-3.7
3,451,566	-		MIT1002_03096	0.61	-2.8
3,451,673	-		MIT1002_03096	0.67	-4.8
3,451,684	+		MIT1002_03096	0.67	-2.9
3,451,701	-		MIT1002_03096	0.68	-3.0
3,451,758	-		MIT1002_03096	0.72	-5.0
3,451,772	+		MIT1002_03096	0.73	-2.0
3,451,772	+		MIT1002_03096	0.73	-3.7
3,451,827	+		MIT1002_03096	0.76	-3.5
3,451,858	+		MIT1002_03096	0.78	-7.4
3,451,858	+		MIT1002_03096	0.78	-1.8
3,451,858	+		MIT1002_03096	0.78	-1.0
3,451,866	-		MIT1002_03096	0.78	-2.4
3,451,866	-		MIT1002_03096	0.78	-3.1
3,451,866	-		MIT1002_03096	0.78	-2.5
3,451,866	-		MIT1002_03096	0.78	-3.2
3,451,866	-		MIT1002_03096	0.78	-4.9
3,452,042	+		MIT1002_03096	0.88	-4.1
3,452,055	-		MIT1002_03096	0.89	-4.5
3,452,157	-				-3.7
3,452,196	+				-4.3
3,452,204	-				-2.8
3,452,291	+				+1.4
3,452,291	+				+0.0
3,452,304	+				-0.5
3,452,304	+				-2.8
3,452,312	-				+3.0
3,452,314	+				+0.1
3,452,322	-				+1.2
3,452,337	+				-0.9
3,452,337	+				+0.4
3,452,345	-				+1.5
3,452,345	-				-0.2
3,452,352	+				+0.4
3,452,352	+				-0.2
3,452,352	+				+2.0
3,452,352	-				+0.6
3,452,355	-				+0.6
3,452,365	-				-0.8
3,452,424	-				-1.4
3,452,424	-				-0.0
3,452,613	-				-0.2
3,452,630	+		MIT1002_03097	0.12	+0.0
3,452,683	-		MIT1002_03097	0.20	-0.2
3,452,752	+		MIT1002_03097	0.30	-0.6
3,452,760	-		MIT1002_03097	0.31	+0.4
3,452,806	+		MIT1002_03097	0.38	-0.0
3,452,815	-		MIT1002_03097	0.40	-1.0
3,452,941	+		MIT1002_03097	0.58	+0.2
3,452,946	+		MIT1002_03097	0.59	-2.0
3,452,969	+		MIT1002_03097	0.62	-1.9
3,452,977	-		MIT1002_03097	0.63	+2.0
3,453,043	+		MIT1002_03097	0.73	-1.4
3,453,043	+		MIT1002_03097	0.73	+0.8
3,453,051	-		MIT1002_03097	0.74	-0.8
3,453,051	-		MIT1002_03097	0.74	+0.6
3,453,051	-		MIT1002_03097	0.74	+0.8
3,453,079	+		MIT1002_03097	0.78	+0.8
3,453,088	-		MIT1002_03097	0.80	-1.4
3,453,115	+		MIT1002_03097	0.84	-2.1
3,453,135	-		MIT1002_03097	0.86	+0.5
3,453,183	-				-0.8
3,453,193	-				-2.5
3,453,193	-				+0.3
3,453,200	-				+0.5
3,453,216	+				-0.4