Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_02898 and MIT1002_02899 are separated by 38 nucleotides MIT1002_02899 and MIT1002_02900 are separated by 176 nucleotides MIT1002_02900 and MIT1002_02901 are separated by 4 nucleotides MIT1002_02901 and MIT1002_02902 are separated by 144 nucleotides
MIT1002_02898: MIT1002_02898 - Ribosome biogenesis GTPase A, at 3,222,901 to 3,223,905
_02898
MIT1002_02899: MIT1002_02899 - 23S rRNA (guanosine-2'-O-)-methyltransferase, at 3,223,944 to 3,224,726
_02899
MIT1002_02900: MIT1002_02900 - hypothetical protein, at 3,224,903 to 3,225,208
_02900
MIT1002_02901: MIT1002_02901 - hypothetical protein, at 3,225,213 to 3,225,494
_02901
MIT1002_02902: MIT1002_02902 - Arginine decarboxylase, at 3,225,639 to 3,227,672
_02902
Position (kb) 3224
3225
3226 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3223.963 kb on - strand at 3224.030 kb on - strand, within MIT1002_02899 at 3224.030 kb on - strand, within MIT1002_02899 at 3224.031 kb on - strand, within MIT1002_02899 at 3224.043 kb on - strand, within MIT1002_02899 at 3224.122 kb on - strand, within MIT1002_02899 at 3224.129 kb on - strand, within MIT1002_02899 at 3224.166 kb on - strand, within MIT1002_02899 at 3224.261 kb on - strand, within MIT1002_02899 at 3224.311 kb on - strand, within MIT1002_02899 at 3224.348 kb on - strand, within MIT1002_02899 at 3224.766 kb on - strand at 3224.795 kb on + strand at 3224.938 kb on - strand, within MIT1002_02900 at 3225.045 kb on - strand, within MIT1002_02900 at 3225.104 kb on + strand, within MIT1002_02900 at 3225.112 kb on - strand, within MIT1002_02900 at 3225.194 kb on - strand at 3225.199 kb on - strand at 3225.210 kb on + strand at 3225.260 kb on + strand, within MIT1002_02901 at 3225.335 kb on + strand, within MIT1002_02901 at 3225.343 kb on - strand, within MIT1002_02901 at 3225.367 kb on + strand, within MIT1002_02901 at 3225.369 kb on + strand, within MIT1002_02901 at 3225.399 kb on + strand, within MIT1002_02901 at 3225.442 kb on - strand, within MIT1002_02901 at 3225.442 kb on - strand, within MIT1002_02901 at 3225.582 kb on + strand at 3225.598 kb on + strand at 3225.695 kb on + strand at 3225.703 kb on - strand at 3225.703 kb on - strand at 3225.706 kb on + strand at 3225.762 kb on - strand at 3225.783 kb on - strand at 3225.789 kb on + strand at 3225.789 kb on + strand at 3225.797 kb on - strand at 3225.797 kb on - strand at 3225.805 kb on - strand at 3225.807 kb on - strand at 3225.982 kb on - strand, within MIT1002_02902 at 3226.014 kb on + strand, within MIT1002_02902 at 3226.022 kb on - strand, within MIT1002_02902 at 3226.022 kb on - strand, within MIT1002_02902 at 3226.198 kb on + strand, within MIT1002_02902
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3 remove 3,223,963 - -0.1 3,224,030 - MIT1002_02899 0.11 +2.3 3,224,030 - MIT1002_02899 0.11 -2.2 3,224,031 - MIT1002_02899 0.11 +1.1 3,224,043 - MIT1002_02899 0.13 +0.5 3,224,122 - MIT1002_02899 0.23 +0.1 3,224,129 - MIT1002_02899 0.24 +0.4 3,224,166 - MIT1002_02899 0.28 -0.5 3,224,261 - MIT1002_02899 0.40 +0.3 3,224,311 - MIT1002_02899 0.47 -0.9 3,224,348 - MIT1002_02899 0.52 -2.2 3,224,766 - -1.6 3,224,795 + +1.1 3,224,938 - MIT1002_02900 0.11 +0.2 3,225,045 - MIT1002_02900 0.46 -2.0 3,225,104 + MIT1002_02900 0.66 +2.7 3,225,112 - MIT1002_02900 0.68 +1.7 3,225,194 - -0.1 3,225,199 - -0.3 3,225,210 + +0.1 3,225,260 + MIT1002_02901 0.17 -0.5 3,225,335 + MIT1002_02901 0.43 +0.3 3,225,343 - MIT1002_02901 0.46 +0.4 3,225,367 + MIT1002_02901 0.55 +0.8 3,225,369 + MIT1002_02901 0.55 +0.5 3,225,399 + MIT1002_02901 0.66 -0.6 3,225,442 - MIT1002_02901 0.81 +1.1 3,225,442 - MIT1002_02901 0.81 -1.9 3,225,582 + -2.4 3,225,598 + +1.2 3,225,695 + +1.2 3,225,703 - -0.2 3,225,703 - -0.3 3,225,706 + -2.4 3,225,762 - -2.3 3,225,783 - +1.5 3,225,789 + -2.4 3,225,789 + +1.3 3,225,797 - -0.3 3,225,797 - -2.9 3,225,805 - -2.5 3,225,807 - -0.8 3,225,982 - MIT1002_02902 0.17 +0.6 3,226,014 + MIT1002_02902 0.18 -2.5 3,226,022 - MIT1002_02902 0.19 +0.4 3,226,022 - MIT1002_02902 0.19 +0.7 3,226,198 + MIT1002_02902 0.27 -0.6
Or see this region's nucleotide sequence