Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02880

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
3,198,032	-		MIT1002_02879	0.66	-1.3
3,198,042	-		MIT1002_02879	0.67	-2.3
3,198,475	+		MIT1002_02879	0.81	-3.9
3,198,516	-		MIT1002_02879	0.83	-5.0
3,198,524	-		MIT1002_02879	0.83	-6.1
3,198,530	+		MIT1002_02879	0.83	-4.0
3,198,560	+		MIT1002_02879	0.84	-2.8
3,198,579	+		MIT1002_02879	0.85	-2.7
3,198,579	+		MIT1002_02879	0.85	-0.6
3,198,623	+		MIT1002_02879	0.86	-3.5
3,198,644	-		MIT1002_02879	0.87	-2.6
3,198,705	+		MIT1002_02879	0.89	-3.3
3,198,705	+		MIT1002_02879	0.89	-3.8
3,198,705	+		MIT1002_02879	0.89	-2.2
3,198,705	+		MIT1002_02879	0.89	-2.2
3,198,705	+		MIT1002_02879	0.89	-0.8
3,198,713	-		MIT1002_02879	0.89	-2.1
3,198,713	-		MIT1002_02879	0.89	-2.2
3,198,715	+		MIT1002_02879	0.90	-2.2
3,198,723	-		MIT1002_02879	0.90	-4.3
3,198,941	+				-0.8
3,198,985	+				-0.4
3,199,000	+				+0.2
3,199,029	+				-1.3
3,199,096	-		MIT1002_02880	0.10	-1.2
3,199,154	-		MIT1002_02880	0.20	+0.6
3,199,252	+		MIT1002_02880	0.36	-1.0
3,199,259	-		MIT1002_02880	0.37	+0.1
3,199,260	-		MIT1002_02880	0.37	+3.1
3,199,284	+		MIT1002_02880	0.41	-1.8
3,199,289	+		MIT1002_02880	0.42	-0.3
3,199,289	+		MIT1002_02880	0.42	+2.0
3,199,289	+		MIT1002_02880	0.42	+0.7
3,199,297	-		MIT1002_02880	0.43	+0.4
3,199,322	-		MIT1002_02880	0.47	-0.9
3,199,322	-		MIT1002_02880	0.47	+0.0
3,199,353	+		MIT1002_02880	0.52	+0.9
3,199,361	-		MIT1002_02880	0.53	+1.7
3,199,481	+		MIT1002_02880	0.73	-0.1
3,199,481	+		MIT1002_02880	0.73	+0.0
3,199,489	-		MIT1002_02880	0.74	+0.3
3,199,555	+		MIT1002_02880	0.85	+1.1
3,199,568	+		MIT1002_02880	0.87	-1.2
3,199,643	+				+0.2
3,199,643	+				-0.3
3,199,659	-				+0.5
3,200,168	-		MIT1002_02881	0.39	-1.1
3,200,530	-		MIT1002_02881	0.78	-1.8