Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02841

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
3,149,698	-		MIT1002_02839	0.89	+1.1
3,149,729	-				+0.7
3,149,731	+				+1.5
3,149,742	-				-1.0
3,149,742	-				+0.4
3,149,864	-				-0.6
3,149,924	+				-1.3
3,150,092	-		MIT1002_02840	0.28	-0.4
3,150,101	+		MIT1002_02840	0.29	-0.3
3,150,109	-		MIT1002_02840	0.30	-3.0
3,150,116	+		MIT1002_02840	0.31	-0.6
3,150,119	+		MIT1002_02840	0.31	-1.5
3,150,136	+		MIT1002_02840	0.33	+0.0
3,150,394	+		MIT1002_02840	0.66	+0.6
3,150,512	+		MIT1002_02840	0.81	+0.8
3,150,512	+		MIT1002_02840	0.81	+0.6
3,150,512	+		MIT1002_02840	0.81	+0.9
3,150,512	+		MIT1002_02840	0.81	+0.3
3,150,517	+		MIT1002_02840	0.82	+0.4
3,150,615	-				+0.9
3,150,633	+				+0.5
3,150,703	-				+0.3
3,150,708	+				+0.4
3,150,734	+				-0.7
3,150,742	-				+0.9
3,150,772	-		MIT1002_02841	0.10	-0.5
3,150,869	+		MIT1002_02841	0.23	+0.1
3,150,871	+		MIT1002_02841	0.23	-1.2
3,150,871	+		MIT1002_02841	0.23	-0.0
3,150,871	+		MIT1002_02841	0.23	-1.5
3,150,871	+		MIT1002_02841	0.23	-4.6
3,150,871	+		MIT1002_02841	0.23	+1.7
3,150,879	-		MIT1002_02841	0.24	+1.0
3,150,879	-		MIT1002_02841	0.24	-0.1
3,150,879	-		MIT1002_02841	0.24	-1.3
3,150,884	-		MIT1002_02841	0.25	+1.3
3,150,884	-		MIT1002_02841	0.25	-0.4
3,150,884	-		MIT1002_02841	0.25	+0.3
3,150,884	-		MIT1002_02841	0.25	-0.4
3,150,884	-		MIT1002_02841	0.25	+1.2
3,150,907	+		MIT1002_02841	0.28	+0.2
3,150,930	-		MIT1002_02841	0.31	-0.5
3,150,930	-		MIT1002_02841	0.31	+1.1
3,150,930	-		MIT1002_02841	0.31	+0.3
3,151,036	+		MIT1002_02841	0.45	-2.3
3,151,144	-		MIT1002_02841	0.59	-0.5
3,151,144	-		MIT1002_02841	0.59	-1.5
3,151,144	-		MIT1002_02841	0.59	-0.3
3,151,168	+		MIT1002_02841	0.62	-1.4
3,151,174	+		MIT1002_02841	0.63	+1.1
3,151,174	+		MIT1002_02841	0.63	-0.2
3,151,211	+		MIT1002_02841	0.68	-1.1
3,151,213	+		MIT1002_02841	0.68	+0.2
3,151,221	-		MIT1002_02841	0.69	-0.0
3,151,337	-		MIT1002_02841	0.84	+2.3
3,151,340	+		MIT1002_02841	0.85	-1.8
3,151,346	+		MIT1002_02841	0.85	-0.6
3,151,371	+		MIT1002_02841	0.89	-1.6
3,151,379	-		MIT1002_02841	0.90	-0.1
3,151,379	-		MIT1002_02841	0.90	-0.8
3,151,381	+				+1.8
3,151,424	-				-1.1
3,151,486	+				+1.6
3,151,575	+				+1.0
3,151,575	+				+0.5
3,151,583	-				-1.1
3,151,583	-				-0.6
3,151,633	+		MIT1002_02842	0.12	-3.7
3,151,748	+		MIT1002_02842	0.26	-0.5
3,151,818	+		MIT1002_02842	0.34	+1.6
3,151,823	+		MIT1002_02842	0.35	+0.5
3,151,826	-		MIT1002_02842	0.35	-2.3
3,151,831	+		MIT1002_02842	0.36	+0.6
3,151,831	+		MIT1002_02842	0.36	+1.2
3,151,838	+		MIT1002_02842	0.36	-0.6
3,151,838	+		MIT1002_02842	0.36	-0.2
3,151,838	+		MIT1002_02842	0.36	-1.3
3,151,839	-		MIT1002_02842	0.37	-0.6
3,151,857	+		MIT1002_02842	0.39	-1.1
3,151,865	-		MIT1002_02842	0.40	-0.8
3,151,865	-		MIT1002_02842	0.40	-0.3
3,151,865	-		MIT1002_02842	0.40	-0.6
3,151,872	+		MIT1002_02842	0.41	-1.8
3,151,872	+		MIT1002_02842	0.41	+0.2
3,151,872	+		MIT1002_02842	0.41	+2.2
3,151,872	+		MIT1002_02842	0.41	-0.9
3,151,880	-		MIT1002_02842	0.42	+1.9
3,151,880	-		MIT1002_02842	0.42	-0.6
3,151,880	-		MIT1002_02842	0.42	+1.5
3,151,880	-		MIT1002_02842	0.42	+0.6
3,151,880	-		MIT1002_02842	0.42	+0.2
3,151,880	-		MIT1002_02842	0.42	+0.5
3,151,880	-		MIT1002_02842	0.42	-0.1
3,151,880	-		MIT1002_02842	0.42	+1.0
3,151,922	-		MIT1002_02842	0.47	-0.7
3,151,961	-		MIT1002_02842	0.51	-0.6
3,151,996	+		MIT1002_02842	0.55	-4.1
3,152,065	+		MIT1002_02842	0.64	+1.5
3,152,092	-		MIT1002_02842	0.67	+1.3
3,152,111	+		MIT1002_02842	0.69	+0.7
3,152,111	+		MIT1002_02842	0.69	+2.3
3,152,120	-		MIT1002_02842	0.70	-0.8
3,152,167	+		MIT1002_02842	0.76	-1.7
3,152,179	+		MIT1002_02842	0.77	+0.2
3,152,179	+		MIT1002_02842	0.77	-1.8
3,152,179	+		MIT1002_02842	0.77	-0.2
3,152,179	+		MIT1002_02842	0.77	-0.1
3,152,187	-		MIT1002_02842	0.78	+0.4
3,152,237	+		MIT1002_02842	0.84	-1.9
3,152,245	-		MIT1002_02842	0.85	-3.6
3,152,259	-		MIT1002_02842	0.87	-1.4
3,152,306	-				-1.0
3,152,358	+				-0.7