Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02804

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
3,107,364	+				+0.5
3,107,364	+				+0.4
3,107,451	+		MIT1002_02803	0.13	-2.4
3,107,459	-		MIT1002_02803	0.14	-0.1
3,107,469	-		MIT1002_02803	0.15	-0.2
3,107,502	-		MIT1002_02803	0.19	-0.3
3,107,524	-		MIT1002_02803	0.21	+1.5
3,107,716	-		MIT1002_02803	0.42	-2.0
3,107,782	+		MIT1002_02803	0.49	+0.5
3,107,785	-		MIT1002_02803	0.50	-1.2
3,107,785	-		MIT1002_02803	0.50	-0.5
3,107,841	+		MIT1002_02803	0.56	+1.2
3,107,878	-		MIT1002_02803	0.60	-1.2
3,107,922	+		MIT1002_02803	0.65	-0.8
3,107,930	-		MIT1002_02803	0.65	+0.5
3,107,939	+		MIT1002_02803	0.66	-0.0
3,107,940	-		MIT1002_02803	0.67	+0.9
3,107,959	-		MIT1002_02803	0.69	+0.1
3,107,970	-		MIT1002_02803	0.70	+0.5
3,108,006	-		MIT1002_02803	0.74	+0.5
3,108,016	+		MIT1002_02803	0.75	-0.4
3,108,036	-		MIT1002_02803	0.77	+1.1
3,108,067	+		MIT1002_02803	0.80	-0.2
3,108,094	+		MIT1002_02803	0.83	+0.1
3,108,136	-		MIT1002_02803	0.88	+1.4
3,108,145	+		MIT1002_02803	0.89	+0.6
3,108,183	+				-3.2
3,108,183	-				+0.1
3,108,232	+				+1.8
3,108,242	+				+0.5
3,108,348	+				+2.2
3,108,368	+				-0.0
3,108,376	-				-0.8
3,108,407	+				-0.0
3,108,407	+				-0.3
3,108,415	-				-0.3
3,108,415	-				-0.2
3,108,475	+		MIT1002_02804	0.12	-1.3
3,108,481	+		MIT1002_02804	0.13	+0.9
3,108,481	+		MIT1002_02804	0.13	-1.3
3,108,481	+		MIT1002_02804	0.13	+0.0
3,108,481	+		MIT1002_02804	0.13	+1.4
3,108,481	+		MIT1002_02804	0.13	+0.7
3,108,481	+		MIT1002_02804	0.13	+0.3
3,108,481	+		MIT1002_02804	0.13	+0.6
3,108,481	+		MIT1002_02804	0.13	+0.4
3,108,481	+		MIT1002_02804	0.13	+0.5
3,108,481	+		MIT1002_02804	0.13	+0.7
3,108,481	+		MIT1002_02804	0.13	+0.0
3,108,481	+		MIT1002_02804	0.13	+0.1
3,108,481	+		MIT1002_02804	0.13	+0.3
3,108,481	+		MIT1002_02804	0.13	+0.4
3,108,481	+		MIT1002_02804	0.13	+0.5
3,108,481	+		MIT1002_02804	0.13	-1.0
3,108,481	+		MIT1002_02804	0.13	+0.5
3,108,481	+		MIT1002_02804	0.13	+0.4
3,108,481	+		MIT1002_02804	0.13	+0.4
3,108,486	+		MIT1002_02804	0.13	-1.4
3,108,489	-		MIT1002_02804	0.13	-0.2
3,108,489	-		MIT1002_02804	0.13	+0.8
3,108,489	-		MIT1002_02804	0.13	-0.8
3,108,489	-		MIT1002_02804	0.13	-0.1
3,108,489	-		MIT1002_02804	0.13	-0.4
3,108,489	-		MIT1002_02804	0.13	+0.3
3,108,489	-		MIT1002_02804	0.13	+1.9
3,108,489	-		MIT1002_02804	0.13	-0.5
3,108,489	-		MIT1002_02804	0.13	-1.4
3,108,489	-		MIT1002_02804	0.13	+1.0
3,108,489	-		MIT1002_02804	0.13	-0.2
3,108,489	-		MIT1002_02804	0.13	-0.6
3,108,489	-		MIT1002_02804	0.13	+0.2
3,108,489	-		MIT1002_02804	0.13	-0.5
3,108,489	-		MIT1002_02804	0.13	+0.5
3,108,489	-		MIT1002_02804	0.13	+0.6
3,108,489	-		MIT1002_02804	0.13	-1.4
3,108,489	-		MIT1002_02804	0.13	+1.4
3,108,491	+		MIT1002_02804	0.14	+1.1
3,108,491	+		MIT1002_02804	0.14	-1.5
3,108,491	+		MIT1002_02804	0.14	-3.7
3,108,491	+		MIT1002_02804	0.14	-1.1
3,108,491	+		MIT1002_02804	0.14	+0.4
3,108,491	+		MIT1002_02804	0.14	+1.0
3,108,491	+		MIT1002_02804	0.14	+0.2
3,108,491	+		MIT1002_02804	0.14	-2.0
3,108,491	+		MIT1002_02804	0.14	-0.1
3,108,491	+		MIT1002_02804	0.14	-1.6
3,108,491	+		MIT1002_02804	0.14	+0.1
3,108,491	+		MIT1002_02804	0.14	+0.4
3,108,491	+		MIT1002_02804	0.14	+0.7
3,108,499	-		MIT1002_02804	0.14	-2.9
3,108,499	-		MIT1002_02804	0.14	-0.2
3,108,499	-		MIT1002_02804	0.14	+2.1
3,108,499	-		MIT1002_02804	0.14	+0.4
3,108,499	-		MIT1002_02804	0.14	+0.2
3,108,499	-		MIT1002_02804	0.14	-1.6
3,108,499	-		MIT1002_02804	0.14	-2.5
3,108,499	-		MIT1002_02804	0.14	+1.0
3,108,499	-		MIT1002_02804	0.14	+0.8
3,108,577	+		MIT1002_02804	0.19	+0.0
3,108,582	-		MIT1002_02804	0.20	+0.9
3,108,585	-		MIT1002_02804	0.20	-2.7
3,108,617	+		MIT1002_02804	0.22	-0.1
3,108,690	-		MIT1002_02804	0.27	+0.8
3,108,701	+		MIT1002_02804	0.28	+1.5
3,108,710	-		MIT1002_02804	0.29	-0.5
3,108,710	-		MIT1002_02804	0.29	-0.7
3,108,782	+		MIT1002_02804	0.34	+2.9
3,108,796	+		MIT1002_02804	0.35	+0.8
3,108,831	+		MIT1002_02804	0.37	+0.9
3,108,843	+		MIT1002_02804	0.38	+1.3
3,108,853	+		MIT1002_02804	0.38	-0.1
3,108,853	+		MIT1002_02804	0.38	+0.4
3,108,866	-		MIT1002_02804	0.39	+0.1
3,108,876	+		MIT1002_02804	0.40	-0.1
3,108,888	+		MIT1002_02804	0.41	-0.3
3,108,894	+		MIT1002_02804	0.41	-1.3
3,108,894	-		MIT1002_02804	0.41	+0.1
3,108,894	-		MIT1002_02804	0.41	-0.0
3,108,904	+		MIT1002_02804	0.42	-0.2
3,108,912	-		MIT1002_02804	0.42	-0.9
3,108,999	-		MIT1002_02804	0.48	-0.3
3,109,018	-		MIT1002_02804	0.50	-0.5
3,109,027	+		MIT1002_02804	0.50	+0.4
3,109,027	+		MIT1002_02804	0.50	+0.8
3,109,110	-		MIT1002_02804	0.56	+2.0
3,109,144	+		MIT1002_02804	0.58	+0.9
3,109,152	-		MIT1002_02804	0.59	+1.3
3,109,174	-		MIT1002_02804	0.60	-0.3
3,109,239	-		MIT1002_02804	0.65	+1.0
3,109,390	+		MIT1002_02804	0.75	-0.2
3,109,396	-		MIT1002_02804	0.76	-0.2
3,109,398	-		MIT1002_02804	0.76	-0.1
3,109,400	+		MIT1002_02804	0.76	-0.1
3,109,424	-		MIT1002_02804	0.78	+1.9
3,109,462	-		MIT1002_02804	0.80	+0.3
3,109,462	-		MIT1002_02804	0.80	-0.0
3,109,494	-		MIT1002_02804	0.82	-2.1
3,109,506	+		MIT1002_02804	0.83	-0.1
3,109,513	+		MIT1002_02804	0.84	+2.2
3,109,836	+				+0.4
3,109,859	+				+0.1
3,109,867	+				+0.0
3,109,867	+				+0.1
3,109,867	-				+1.2
3,109,876	-				+0.5
3,109,914	+				+1.4
3,109,953	-				-1.1
3,110,037	+		MIT1002_02805	0.15	-1.2
3,110,145	-		MIT1002_02805	0.28	-0.5
3,110,208	-		MIT1002_02805	0.35	+1.0
3,110,299	+		MIT1002_02805	0.46	+0.9
3,110,299	+		MIT1002_02805	0.46	-0.2
3,110,351	-		MIT1002_02805	0.53	-0.6
3,110,359	+		MIT1002_02805	0.54	+0.2
3,110,392	-		MIT1002_02805	0.58	-1.4
3,110,438	+		MIT1002_02805	0.63	+0.6
3,110,486	+		MIT1002_02805	0.69	+0.9
3,110,494	-		MIT1002_02805	0.70	+1.0
3,110,496	-		MIT1002_02805	0.70	+1.7
3,110,557	-		MIT1002_02805	0.78	-0.1
3,110,557	-		MIT1002_02805	0.78	+0.8
3,110,677	-				+2.7
3,110,733	+				-0.1