Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02672

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment A, time point 3
2,970,825	+		MIT1002_02671	0.78	-0.3
2,970,911	+		MIT1002_02671	0.81	+1.0
2,970,917	-		MIT1002_02671	0.81	-0.0
2,970,953	-		MIT1002_02671	0.83	+1.2
2,971,104	-		MIT1002_02671	0.88	-0.3
2,971,173	-				-0.0
2,971,173	-				-0.0
2,971,193	-				+0.0
2,971,224	-				+0.1
2,971,230	+				-1.2
2,971,251	-				+0.8
2,971,312	+				-2.8
2,971,320	-				-0.3
2,971,433	+				+0.9
2,971,435	+				+0.6
2,971,474	+				+1.0
2,971,482	-				+0.3
2,971,505	-				-0.5
2,971,527	+				+0.2
2,971,547	+				-2.7
2,971,622	-				-0.9
2,971,637	+				+1.1
2,971,645	-				+1.4
2,971,766	+		MIT1002_02672	0.17	+0.0
2,971,824	+		MIT1002_02672	0.20	+0.3
2,971,850	+		MIT1002_02672	0.22	-1.5
2,971,991	-		MIT1002_02672	0.30	-1.0
2,972,029	-		MIT1002_02672	0.33	-3.5
2,972,101	+		MIT1002_02672	0.37	-0.4
2,972,127	-		MIT1002_02672	0.38	-0.5
2,972,144	+		MIT1002_02672	0.39	-0.5
2,972,154	+		MIT1002_02672	0.40	-0.9
2,972,154	+		MIT1002_02672	0.40	-3.2
2,972,165	+		MIT1002_02672	0.40	-1.3
2,972,338	-		MIT1002_02672	0.51	+0.3
2,972,343	-		MIT1002_02672	0.51	+1.7
2,972,343	-		MIT1002_02672	0.51	+1.9
2,972,374	-		MIT1002_02672	0.53	-1.2
2,972,435	+		MIT1002_02672	0.56	+0.8
2,972,435	+		MIT1002_02672	0.56	-0.3
2,972,435	+		MIT1002_02672	0.56	-0.4
2,972,474	-		MIT1002_02672	0.59	-1.3
2,972,474	-		MIT1002_02672	0.59	+0.6
2,972,685	+		MIT1002_02672	0.71	-0.8
2,972,726	-		MIT1002_02672	0.73	-1.5
2,972,743	-		MIT1002_02672	0.74	+1.3
2,972,752	+		MIT1002_02672	0.75	-3.2
2,972,793	-		MIT1002_02672	0.77	-1.0
2,972,798	-		MIT1002_02672	0.78	+1.5
2,972,827	+		MIT1002_02672	0.79	+0.3
2,972,827	+		MIT1002_02672	0.79	+0.2
2,972,835	-		MIT1002_02672	0.80	-1.1
2,972,872	+		MIT1002_02672	0.82	+0.9
2,972,946	-		MIT1002_02672	0.86	+1.5
2,972,982	-		MIT1002_02672	0.88	-1.1
2,973,015	-				+0.6
2,973,016	-				+0.3
2,973,065	+				-0.5
2,973,085	-				+0.4
2,973,102	+				-0.8
2,973,105	-				-2.9
2,973,185	-				+0.8
2,973,187	+				+2.5
2,973,187	+				-1.8
2,973,187	+				-1.8
2,973,187	+				+0.9
2,973,187	+				-1.0
2,973,187	+				-1.1
2,973,187	+				-0.5
2,973,187	+				+1.5
2,973,187	+				-0.1
2,973,195	-				+0.5
2,973,195	-				+1.5
2,973,195	-				-2.0
2,973,195	-				+0.9
2,973,195	-				+0.7
2,973,195	-				-0.8
2,973,195	-				-0.2
2,973,195	-				-0.5
2,973,195	-				-0.2
2,973,195	-				-1.5
2,973,195	-				+1.3
2,973,195	-				+0.1
2,973,195	-				-0.1
2,973,197	+				+0.4
2,973,236	-				+0.0
2,973,254	+				+0.4
2,973,260	+				-0.1
2,973,260	+				+0.4
2,973,379	-				+1.1
2,973,384	-				+0.3
2,973,456	+		MIT1002_02673	0.14	+0.7
2,973,456	+		MIT1002_02673	0.14	+0.7
2,973,497	-		MIT1002_02673	0.16	+1.4
2,973,507	+		MIT1002_02673	0.17	+0.8
2,973,507	+		MIT1002_02673	0.17	+1.3
2,973,630	+		MIT1002_02673	0.24	+0.7
2,973,686	+		MIT1002_02673	0.27	+1.7
2,973,752	+		MIT1002_02673	0.31	+1.3
2,973,760	-		MIT1002_02673	0.32	+0.3
2,973,815	+		MIT1002_02673	0.35	+1.6
2,973,844	+		MIT1002_02673	0.37	+1.8
2,973,852	-		MIT1002_02673	0.37	+0.3
2,973,870	+		MIT1002_02673	0.38	+0.6
2,974,027	+		MIT1002_02673	0.47	+0.8
2,974,028	-		MIT1002_02673	0.47	+0.4
2,974,035	-		MIT1002_02673	0.48	+1.3
2,974,107	-		MIT1002_02673	0.52	+0.8
2,974,109	+		MIT1002_02673	0.52	+1.2
2,974,109	-		MIT1002_02673	0.52	-0.3
2,974,119	+		MIT1002_02673	0.53	-0.6
2,974,152	+		MIT1002_02673	0.55	+1.1
2,974,157	+		MIT1002_02673	0.55	+0.7
2,974,160	-		MIT1002_02673	0.55	-0.3
2,974,160	-		MIT1002_02673	0.55	+0.8
2,974,160	-		MIT1002_02673	0.55	-3.0